Array 1 1016022-1016660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085069.1 Escherichia coli strain P27_L1_05.20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1016022 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 1016083 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 1016144 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 1016205 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 1016266 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 1016327 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 1016388 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 1016449 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1016510 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1016571 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1016632 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1042360-1043302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085069.1 Escherichia coli strain P27_L1_05.20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1042360 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 1042421 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 1042482 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 1042543 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 1042604 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 1042665 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 1042726 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 1042787 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 1042848 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 1042909 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 1042970 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 1043030 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 1043091 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 1043152 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 1043213 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1043274 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //