Array 1 2441-121 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNVV01000038.1 Azoarcus indigens strain DSM 12121 Ga0215687_138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2440 32 100.0 36 ................................ AAAACGACCGGCACCGGCGCGATGGCGCTTAGCGGA 2372 32 100.0 36 ................................ TCGATTACCTGGATCTCCACAACCTGGCGCGTGCTC 2304 32 100.0 34 ................................ TGCCCTTCCTCTATCATCCCCTGCAGACCGGCCC 2238 32 100.0 34 ................................ TTTTTCGGCCGCAATCCGACGGTAGAGCGTGCTC 2172 32 100.0 34 ................................ CTCCATAGAGCGGCACAAAACCGTTCCGCGGTAT 2106 32 100.0 36 ................................ AAGATCTATACCGGGGCTGAGGATCAAATGCCAGAC 2038 32 100.0 39 ................................ GGTGGTGATGTCCTGCAGCCGCTCGACGTCCACCATCAC 1967 32 100.0 36 ................................ CGCCACCAGGGCCGCCGCGCCGGCCAGGCGCTGGAC 1899 32 100.0 35 ................................ GTGATGGGCGAAAGCTGCTGCCCTTCCGTGATCAT 1832 32 100.0 35 ................................ CGCCTGCTGGGCGCAGGCCCAGCCCACCCAATCGC 1765 32 100.0 34 ................................ CTGAGCGAAGGCGAGCAGAGTCGCCCGGCTCGCC 1699 32 100.0 34 ................................ CGCCGCTCCGTCCAGCCTCCCGCCCGCCGTCCTC 1633 32 100.0 36 ................................ AGCCTGGAGAGCGCGGTCATAAATCCAGAGAGCAAG 1565 32 100.0 36 ................................ CTCCGCCAGTTGCACCCGTACCCTGGGCGCGAGGCC 1497 32 100.0 38 ................................ GGGAATATGATCCGTCAATGGCATACCGAATTAGGCAA 1427 32 100.0 34 ................................ GTCGGCCGTCATCACCACGGCAATTTCGGCGCTC 1361 32 100.0 35 ................................ CTGAGCAACGAGGAAATCCCCGTCGTCCTTGAAGA 1294 32 100.0 35 ................................ CGCCCAGGTCTGGCCGCCATCCACCGAGCGCAGGA 1227 32 100.0 36 ................................ GAAGGCGTAATTCCTGCGCCCGTGCTGGCAACGTAC 1159 32 100.0 36 ................................ TTGTTTTCGGGCTAAGCCCTAACTCATCCCAAGGGG 1091 32 100.0 37 ................................ GCCGAGTTGGCGCTGCGCGAAATGCTGGTCAAGGCGC 1022 32 100.0 35 ................................ TATCTCGTACGATTCGCTTGTCTCGCCCACCGGGA 955 32 100.0 35 ................................ CCCATATTGCCCTCAATGCGGAGGCAATCAGTGGG 888 32 100.0 36 ................................ TTTACCCGTGCGCCGATAAGCTCATCCAGGTAACAA 820 32 100.0 35 ................................ ATCGCTGTACGGACTGCGGCCATCGCGGTGAAGCA 753 32 100.0 36 ................................ ACTTCGGCCCAGGCGGAAATCTCCCGCACGGAGCCG 685 32 100.0 36 ................................ GGTTTGTGCGGCGTCCGGTTGCGCGGCCGCCTGCGG 617 32 100.0 35 ................................ CCACACGAAGGGCGGCCGGTGAAGAACACCTTCAG 550 32 100.0 34 ................................ TCGCCGTGCTTGGCGTAGCTGTCGAGCAGCTCCA 484 32 100.0 35 ................................ ACGTTGGAGCTCAAGCGCATCGACGAGAGCCGCAA 417 32 100.0 35 ................................ GGCATCCAGGGCGCGCGCGTCGGCGCAGCGCTGTG 350 32 100.0 33 ................................ GCGGTCAGTTTGGCGGATACCAAATCCACCGGC 285 32 100.0 35 ................................ CAGATCGACAACTGACCCCCGGTTTGCGCCATGCC 218 32 100.0 34 ................................ TTTCCTGGTGGCCCTCCGTACTGGGATGCGCGCC 152 32 96.9 0 ................A............... | ========== ====== ====== ====== ================================ ======================================= ================== 35 32 99.9 35 GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Left flank : CCCTTCCTGTGGAAGTGAGCCGCCACCATGATGGTCCTGGTGAGCTATGACGTAAGCACCCGCGAACCGGCCGGCGAGCGCCGCCTGCGCCGTGTCGCCAAGGCCTGCCGGGATTACGGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAGGTCGACCCCGCGCAATGGACGGTGCTCAAGCACCGGCTGATGGAACTGATAGACCCGGCGCAAGACAGCCTGCGCTTCTACTACCTCGGCAAGAACTGGAAAACCAAGGTCGAACACATCGGCGCCAAGGCCGCACTCGACCTGAACGGTCCACTGGTTTTCTGACCGCCTCCGCGAACCCCTAGCTGCCGGGAAAAGTCCGGGAGGTTCGCGTTTTTCTATCCAGCTGACGTAGAAGAGATTTTCTGGATCTTGCCAAGTTCATAGGCATCTTGCAGGGGTTGTCCGTGCAGGTTCGCGGAATCCGGGCATATTTCCCTTGCCTGGCAAGGTGTTACCTTGGTGGC # Right flank : CATGAGCCTGGCGCCCGGCAGCCATCTGTCAGGCGACATCGTAAATTGACCCCCTAGCGACACGAGGAATTGCCCCCCTCGCTCGCAAGGAGGGCATCGTTGGAAACGAAGCACATTGAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1975-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNVV01000047.1 Azoarcus indigens strain DSM 12121 Ga0215687_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1974 32 100.0 34 ................................ CCTGCTGGGCGAGTTGGGAGTATGTCCGGGCTTA 1908 32 100.0 34 ................................ GAGTGCGCACCAGAGGAACGGCGGACACGACGAA 1842 32 100.0 35 ................................ GAGGCCGAAATGGTGCCCATGGACTATGCGGACGG 1775 32 100.0 35 ................................ GTCATCGCCGCCCACCTCTCCGGCGTCGTACCCAT 1708 32 100.0 35 ................................ CGGCGTCTTCGGGGCATCAATTGGACTATCCGGCT 1641 32 100.0 36 ................................ GCTGCTGGTGATGATCCGCGCGCACGAGGAAAGCGG 1573 32 100.0 36 ................................ GGTGAGGTCCGCGTACTGAATGGTGAACCGCCGCAC 1505 32 100.0 35 ................................ GGCCTGGCCGAGCAAGCGGGGTGGGTTTCTCCCTG 1438 32 100.0 35 ................................ AAGGAGCCCCCGCCGGTTCCGCGGGAGTTGCGGCC 1371 32 100.0 35 ................................ CCAGTCTGGCACCAGCTCGCGGACGCTCCAGGGGT 1304 32 100.0 35 ................................ GGGTTTACTGCGTACCTGGTGGCCGACATGGCGGT 1237 32 100.0 36 ................................ CTGCTGGGCTGGGGTTTGCTCCGCCTGATCCTGCCT 1169 32 100.0 36 ................................ CGCTTCCACCGTGAGGCGCCCCGCGGCAAGCTTGGT 1101 32 100.0 33 ................................ GCCCGCCTGCTGGACCGCACTGCCGCGGTCCAG 1036 32 100.0 35 ................................ AGCAAGCAGGTGATCGACACCGCGGACCGTCTCGA 969 32 100.0 35 ................................ ATCTTTGGCGACATCGGCGAGAGCTGGTGGGAAGA 902 32 100.0 34 ................................ CAGGTCATCGCCGTTATCGTCGATGCGGAGGTAT 836 32 100.0 34 ................................ CTGCCGTCTCGGGCGCTGCAGATCGCATCACGCT 770 32 100.0 36 ................................ CTGCCGAGTGCTTCGGCGATTTCCGCGGCAGTGCGG 702 32 96.9 35 ...........T.................... GGCCGGAACATGCCTATCCCTGTGCGCGAGGACGG 635 32 100.0 34 ................................ GTGAGCGTGCTACTGCTCAGCAGATACCGCTCTG 569 32 100.0 34 ................................ CCAATACCCCATCCGAACAAAATGTCCCATCCGC 503 32 100.0 36 ................................ ACGGATGGGCTGGATGGCATGGTGGCCGGCTTGGGC 435 32 100.0 36 ................................ GCGCGGCGGCGTCCACGCCGGATAGCCCATCCACCA 367 32 100.0 32 ................................ GTGGGTACCGCCTACGCACAGCGCGTGGTCGC 303 32 100.0 35 ................................ GCGCGATGGACGATCACCCGCACGCCCAGGCGGTC 236 32 100.0 37 ................................ GCCTGCCGCTGGCCCAGAGGTGGAAACCATGGGGCAC 167 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 28 32 99.9 35 GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Left flank : CGCCTCACCCGCGCCTGCGTGGTGCATATCGTCGGCATCGTCGAAGGCTCGCCGGTGGATCGCATCACCGGCCACAACCTCGCCATCACCGGCAACCGCGAACTCTTCGCCAAGATCCAGCCGCTGCGCGACGCCTACGAGGGCGTGTTCCGCAACCTCGTCAACGCCCTGCCCGTCGCCCCCGGCACCGATCTCTCCCTGCTCCGCCTCTTCCTCCTGGGCGGCATGAACTGGGTCTACCTCTGGTACCACCAGGGCCGCCGCAGCCCGGAAGAAATCGCCCACGCCATGGTGGACATGCTGCGCCGCGGCGTGCAGGCCTGAGCGCGAACCCCAAGCTGCCGGGAAAACCCCGGGAGGTTCGCGTTTCCTCAAGCCACTGATCGGAAACCGCTTTTTCCTGGCAGTCCAATCCACCCGGATCGAACCACCGCTTTTTCTGCACGGTTCGCGGACAAAGGCACGCCCAGGCTGAGGAATCAGCGTGTTACGGTGGCAGA # Right flank : CGGCTGGGGCATCAAGGCAAATGCATGGATGCTGGGGTCGCTGTCAAGCGACACGAGGATTTAACCCCCTGACGACATCTGGAATTGACCCCCTGGGTTAATCAACTCTCCGCGGTGATCGGGGTGGGGGCCGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCCTCGCGGACGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 220139-219163 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNVV01000007.1 Azoarcus indigens strain DSM 12121 Ga0215687_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 220138 32 100.0 35 ................................ CAACCCGGCATGATCATCGACGACCTTGCCCCCGG 220071 32 100.0 36 ................................ GAGCAGCGCGGGGTAGGCCACGAAATCCTCCCCCAG 220003 32 100.0 35 ................................ GATCTCGCGCTGGAGGCTGAGGTAGTACTCCTCTG 219936 32 100.0 35 ................................ AAGGCGGTGGCGGCCATCTACGGGCGCTACGGCCT 219869 32 100.0 38 ................................ GACGCAGTACCGGACGAGATCGCGGAAGCTATGGGCAA 219799 32 100.0 36 ................................ GCCTACTGCTCGGCCTGGGAGTGCGAAACCAAGGAA 219731 32 100.0 35 ................................ TCTCGCAGCCGAATCAGATCGGACAGCGGGTTGTC 219664 32 100.0 34 ................................ GTCCTCGCGCGGCTGGGTAAGCCTGCAGTCCCAT 219598 32 100.0 35 ................................ GCCGGCGCCGTGCCCATCGGCTACGCCCGCACCGC 219531 32 100.0 36 ................................ ACCGGCGGCGCCAGCCTCACTTACATGGCCATCGGC 219463 32 100.0 37 ................................ GTGCCCGATTTGGGCGAGGTAATCCGCCACGCGGGTG 219394 32 100.0 36 ................................ GATGAGCTGGTGACGGCGCCTGGCCAGGTGACGAAG 219326 32 100.0 33 ................................ CGTAACAACCTGTCCAAACCGCTGCAGGTACTG 219261 32 100.0 36 ................................ TCCCGCTGCGGCACCTCACCGCCCGCGCCAGCGTGC 219193 31 75.0 0 .....................-.CC..TCCTT | ========== ====== ====== ====== ================================ ====================================== ================== 15 32 98.3 36 GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Left flank : CCGCGGCCCCCACCCCGATCACCGCGGAGAGTTGATTAACCCAGGGGGTCAATTCCAGATGTCGTCAGGGGGTTAAATCCTCGTGTCGCTTGACAACCACGCTCCAGCCCGGCG # Right flank : CCATTCGCCGAGCTGAGGTTCTGCGCGCATTGATGCAGAACCATCGTCACAGGGCTTGCCCTCTGCCGGCCCAGCCTCAGTCCCGCAACTCCCGCCCCGTCAGTTTCAGGAACACGTCCTCCAGGTTCGCCGGCCGGTGCAGGTAGCGCAGGCCTTGTTGCTCGGCGAGGTGGGCGAGCAGGGGGGCGGGGTCGTGGACGTAGCAGAAGGCGGTTTCGCCGCTGATTTCGTAGCGGTGGGAGAGGGCGGCGGCGTGGGTGTTGGCCCAGGCGGCGGCGCCGCTGGAGGTCGCGGTGTCGTGGCCGTTCCAGTCGCCGAAGACTTCGACGACTTGCGGTTCGATGTGGGCGGCGATGACCTCGCGCGGGCTGCCGGTGGTGAGCAGGCGGCCGGCGTCGAGGATGGCGAGTTGGTCGGAGAGGCGTTCGGCCTCGTCCATGAAGTGGGTGGTGAGGAGCACGGTGGTGCCACCGCGTATGAGTTGCTTGAGGCGGTCCCAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 96-978 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNVV01000008.1 Azoarcus indigens strain DSM 12121 Ga0215687_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 96 32 100.0 35 ................................ CGTCGTACGCCTCCGCGCCGGCCCCGACCGCCACC 163 32 100.0 34 ................................ GTGTTCGGCCGCTCGAAGCCCGCCGCGCCCAGCG 229 32 100.0 36 ................................ ATGTACGCCTCCTGGCGTGTCAGCCCCTTCGAAGTA 297 32 100.0 36 ................................ GTTCTTGATCAGTTGGATTTCGAAATTCCGATGGGG 365 32 100.0 35 ................................ TTCGAGAACAGAGGCGAATGATTACTTCGGCTGGG 432 32 100.0 35 ................................ CGGCGCAAAGGGCGTCGGTCTCCCCCACGGTGCTG 499 32 96.9 35 .....A.......................... AGCCCGACCGCATCCGGCCTGAACTGCTTGACCAG 566 32 100.0 35 ................................ AGGCCGAGGGGTATGCGCCGCTGATGCGATTCGGT 633 32 100.0 37 ................................ GGTGCCGGCGTCGCCCCCGACGGCACGCCCTGGGCGC 702 32 100.0 34 ................................ CGGCGCATACAGCTCAATAGGCGCATAGCCGCCC 768 32 100.0 35 ................................ ACCGTCCCCGACGTCTGCCCTTCCGGACACGACTC 835 32 100.0 13 ................................ GGCCTCGAAAGGC Deletion [880] 880 31 87.5 35 C..A..-A........................ CACAGACCGGCCTCGCCCATGAAGAGCGGGTTCAT A [882] 947 32 90.6 0 ..........C...T......C.......... | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 98.2 34 GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Left flank : CCTCAATGTGCTTCGTTTCCAACGATGCCCTCCTTGCGAGCGAGGGGGGCAATTCCTCGTGTCGCTAGGGGGTCAATTTACGATGTCGCCTGACAG # Right flank : CCGCTTGATGCGCTCGCGCTCGCGCAAATTGCGCCACGTTCTTCGATGCACAGCTCGCTCCCCGGCCCAGCCGCAGCAGTTCTGCCGGCTTGGCCGGGGAAAGCGGCCTCAGGTTTTGAGAGCCTTCTTGCCGCTCTCCCCCCAGAAGCGCTCCATTGCGATGTAGGTGTAGGAGGCGCTCCATCCGATCAGGAGCAGGCCGTTCAGGGCTTCCACGCCGGCCATCAGGCGCAGGTCTCCCTTGGGCACCACGTCGCCGTAACCCAGTGAGGTGTAGGTTTCGGCGGAGAAATACAGCGAGACGTCGAAAGAGAAACGGCCCGCATCGCCGAGATGGCCGAGTTTTCCGAAGCGGGCCAGCAGGTAGAGCGTGGCGGCGTACAGCAGTATTTCCAGCGTGTGGGCGAGAAAGGCGACGAAGATCACGATGACCAGCCGGGCCCGGGCCCGCACCGGCGCCCTGGACAGGTGGCGGTTCATCAGGCCGAGCACCTCGTAGT # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCCTCGCGGACGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //