Array 1 28576-30105 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXD01000006.1 Pseudomonas aeruginosa isolate P, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28576 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 28636 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 28696 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 28756 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 28816 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 28876 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 28937 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 28997 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 29057 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 29117 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 29177 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 29237 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 29297 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 29357 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 29417 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 29477 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 29537 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 29597 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 29657 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 29717 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 29777 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 29837 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 29897 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 29957 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 30017 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 30078 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40268-38979 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXD01000006.1 Pseudomonas aeruginosa isolate P, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40267 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 40207 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 40148 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 40088 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 40028 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 39968 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 39908 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 39848 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 39787 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 39727 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 39667 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 39607 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 39547 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 39487 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 39427 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 39366 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 39306 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39246 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 39186 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 39126 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 39066 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 39006 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //