Array 1 194533-194769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOFM010000002.1 Pediococcus pentosaceus strain FAM 24213 FAM24213-i1-1_scf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 194533 37 100.0 29 ..................................... CATACAAGCTACCATCTTCCCTACCTCCT 194599 37 97.3 29 .......................C............. CATGTTTAGCATTATGAGATGCACCGGTT 194665 37 97.3 29 ...........G......................... GGGATTGGATGTATGACAATGATTTTATG 194731 37 86.5 0 ...........G................AA..T...A | CC [194758] ========== ====== ====== ====== ===================================== ============================= ================== 4 37 95.3 29 GTTTCAGAAGAATGTTAAATCAATAAGTTCAAGTACT # Left flank : TCAGAACTTAGTTTTAACAAAATATTTGCGCCAAATTGAAAAGTTATTTTTACAGTCTGTTACAGATGAACAACAAAATAAAATTCATGATGAAATCAATCGTATATTTAACATAGTTTCCGAACAATTATTTTTACTAGATTTACCGATAGAAGTTAACTTTGATTTTGATCTTAAAAAGTTATTTAAATATTGCGGGATTCGATTTGATCCAATTTTAATTAGTAAACCATATGGTATAATTGAAACAATAATTAAAATTCATGAAACTAGTAATCTTGACTCGTGTATAGCGTTAACTAATGTAGCTCATTATTTAACGTCAATCGAATTTGAAGAACTTAGCCAGTTAGTCAAAGAGACGAATCAAAAAATACTACTAATCGAATTCACAGAAATAGAAGAGCAGAACTTCTATGGAAACGCTGAATTCTACTACATTGATACTGATTTTATTGATTGGCACAACTGAAACCATTATTTTTTTATGAGAATTAACG # Right flank : AAAATGTACCCCGCAACGGTTTAGACAGCTGTTACAATTTTCCACAACTAGTTCGACAGTCCAAAATAACAAATTAAAAAGAATCATTTTAGCCACTAATACTTAGTGAAACTAAAATGATTCTTTTTGTTATTTAATTACTAACGGTAAAATAACGACCGAATTCATTAAAATATGAGCAATCATCGAAGTTTGAATACGTCCGGTCTTTTTGTACAACCAGCAGAATAGCAAACCAATGGCCGCATATAGAAAGATGTGACTATCGTTGTGCATAAATGCAAAGGCTAGACTAGAAATGATGGCCATGACGGTGAATCCTAGGGTGGAATCAGCTCCAAACATCACACTGAGGTTACCAAATAAAACTTTTCTAAAAACCAACTCTTCCATGATTGGAGCTCCCACAGTGATTGCTAAAATGAAAAATGGATTGGTTTTAGCCAAAGTCACTAAAGTTGCGGTGTTTTGAGAAGTAGGATTACTTCCAAAAATGACCG # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGAATGTTAAATCAATAAGTTCAAGTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 4455-3361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOFM010000013.1 Pediococcus pentosaceus strain FAM 24213 FAM24213-i1-1_scf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4454 36 100.0 30 .................................... TAGAAATTCTAAAGGAAAGGTAGACGCACC 4388 36 100.0 30 .................................... ACTAAAAAAGAAGATTGATTGGAGGCGTGG 4322 36 100.0 30 .................................... GAGTCTGTCATAGGTGTGCCATCAGGTTTA 4256 36 100.0 30 .................................... CAGTGAAGCTGCTTACTCAACAGCCCTACA 4190 36 100.0 30 .................................... CCAGTACTTTCATCGGATCACTAGGTAATT 4124 36 100.0 30 .................................... AAAGAAAGAGCTTAAAGCCCTTTTTGATAA 4058 36 100.0 30 .................................... AGCATAGCTAAGGCCCCTATCGAGCATTTC 3992 36 100.0 30 .................................... GCTTATCCGTATGTGGTTAGCGGTAAGAAC 3926 36 100.0 30 .................................... CAATTGAAGAATAGTGAAGCTCAACGGCTT 3860 36 100.0 30 .................................... GATTGGTGGTGAGATAATGTCGCAATATGA 3794 36 100.0 30 .................................... TTGCCCAATGTTGTTTTGCTTCTCAATCAC 3728 36 97.2 30 ................................G... TAAAAGCAATTATCGAGGAACGGACAGCGA 3662 36 100.0 30 .................................... TAGCATGTCAGATAACATTGAAGCAGCTAA 3596 36 100.0 30 .................................... TGGTCAAGTTGCGATTATGATGGCTCACGG 3530 36 100.0 30 .................................... AGCCCAGCGAATATGAATCATGTCAGACTG 3464 36 100.0 30 .................................... TAAGTTTGTTAACATGACACAAACTAGCAA 3398 36 86.1 0 .....................C.CT...G..T.... | GG [3377] ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.0 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TAGTGATGGGGTGAGTGAAAAGTATAGTTCCGGGATTTACAAGCAACTTGAAGCTGTATTGACTGATGATCAGCGTAAATCCATAACTGACATGAACAGTCAGTTATATACCCTTGTTCAGCAATGCTTATTCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATTCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCACTCATAGTACATTAAAATCCGGTTATAAAAAATCG # Right flank : TAGTGGCCGTTTTTATTTCTGTGCTATACTAGGAAATACAGATGTTCATTAGAACTGTCCAAAAAGGGAGAGCTAGAAATAACCAAGTCCGCTTGGGCCACCTTCGTCTTAAGCTGGCTCATTGTAGCCAGTAGTTGAAATCCAGATTGAACTTGGGCGTGTAAAAAGTAGCGCAAAGCAAAACCAATCCCACCAGCGGCCCCATCGCCTTCATGAGCACTTACCGTACCACTTGCGACCGTCATATAATGCGCCAAGGCGCTGTCGTGAGCCTGAACGTGATCTGCCGGTAAGCCCTTTTGTGGGCCAAAAATCTTCGCCGCTCCATTCGGCCCTGTTAACGGATTGGTTACGTCCGCCGCACTAATAAATGTCACTCCCGCTAATTGTGGCAAGATATCCTGATCATCAATCTGGGTGACGCGACTTAAATCGGCGCCAGTCATGTCTAATTCCTGACCATCGGCCGCCATAAATCGATACCCGAGGGCCCGCAGTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //