Array 1 674202-677342 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483471.1 Streptococcus cristatus strain NCTC13807 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 674202 23 95.7 47 ........C.............. TTATTGTTTTTAATCTCATAAAAATCTAAATAAAGTTAGACCCCCCC 674272 23 100.0 51 ....................... GATTTTGAGTTTAGGAATGCGTATGCCCCATCGATTCGTTAGAACCCCCCA 674346 23 100.0 50 ....................... CTATTTGTGTCCTTATCTGTAACCTTATTACGGTTCGTTAGAACCCCCCC 674419 23 91.3 48 ........C.....A........ TTATAATGCTTGTGGCTCTTAGGAAGGAACTTCCGTTAGAACCCCCCT 674490 23 95.7 48 ..............T........ GATCCTATGTCAACTACATCAAAATAATATACGCGTTAGAACCCCCCT 674561 23 91.3 49 ........C.....A........ TTGTTTTGCATTGGTGTGTGGAAATAAAGATCCATACGTTAGCCCCCAA 674636 23 91.3 50 ......T.......A........ AAATCTTAAGTTTTTCAATTTACTTGAAATTCCCATTGGTTAGCCCCCCC 674710 23 100.0 48 ....................... TTTCGCACGATGTCGCTTATGTGGTTGATGTGTTCGTTAGAGCTCCCC 674781 23 91.3 51 ........C.....A........ TTGTTTTGCATTGGTGTGTGGAAATAAAGATCCATTCGTTAGATCCCCCAA 674856 23 91.3 44 ........C.......T...... CTGCATCTTCTTCTGTCCAGACCAGCTGGTATGTTAGCCCCCAA 674925 23 91.3 48 ........C.........T.... CTACCGTTCTGCGGCGCTATCCCAGTGAGGTACTGGTTAGAACCCTCC 674996 23 100.0 50 ....................... CCAACAGGGGCTTTACCTTGATTTGCTGGGTCTAATGTTAGCTCCCCCCA T [674997] 675071 23 91.3 50 ........C.....A........ TTGCGATTCCCATGTTTTAAAACAAACATTTTTTTAGTTAGAATCTCCCA 675144 23 95.7 50 ........C.............. TGTCATCATTTTATAAATATAAGAGTCGCTCATTTCGTTAGAACCCCCAT 675217 23 95.7 51 ........C.............. ATAAGTTTTATAGGTTATCATCGAATTAAAGAACTTGAGCTAGACTCTTCC 675291 23 91.3 50 ........C.....T........ TCGTCGATACGACTCTGAATGTCCATATCAAGATTTTGTTAGACCCCCAA C,A [675292,675295] 675367 23 91.3 53 ........C.....T........ AAAAAATCCACTAGTGAAGCGATAGGAGTTTGGGATGAGTTAGACCCCCCCCC 675444 23 100.0 49 ....................... CCCAATTGGCTCTTTAGTTTCAATCTCAAGGATTGTGTTAGAACCCCCA 675516 23 95.7 49 ........C.............. TTAAAATACTCCTTCGTCCAGCTGTACACTGTATCAGTTAGACCCCCCC 675589 23 95.7 50 ......................T GGTTCTAAAACCTCGCATTGAGCAATATCTTCTGTGTTAGATCTGCCCTA 675662 22 87.0 49 ...-..T.C.............. GAAGTAACGAAGCCTAATACATTATCAGGACCCTTTGTTAGACCCCCCC 675734 23 100.0 47 ....................... GTTTTCACCGCTTCTTTCTTATCCGGTGTTTTTAGTTAGAACCCTCC 675804 23 95.7 50 ..............T........ TTGACGATGACAGGGCGCTTTTGGACATCACGGTACGTTAGATCCCCCCT T [675805] 675878 23 95.7 46 ..A.................... GCCATGCCAGCATCTTTAATAAAATCAATCATTGTTAGACCCCTCC 675947 23 95.7 50 ..............A........ ATAAGTTTTATAGGTTATCATCGAATTAAAGAACTTGGTTAGACCCCCCA T [675948] 676022 23 91.3 46 ........C.....T........ TCACGCTCCCAATCTAAAATCACGCGCATTTGTGTTAGAGCCCCCT 676091 23 100.0 48 ....................... AGAAGAGTGCCGGATTTACAGAAATGGTCGATAATGTTAGACCCCCCA 676163 23 95.7 48 ........C.............. GAAATCAAGTGCACTCAAATCATCAGCTCCTTTAGTTAGAGCCCCCCA 676235 23 95.7 48 ........C.............. ATACTTGAAGATTCAACAATAGCGAACCTACGGCCGTTAGAACCCTCC 676306 23 100.0 50 ....................... CTAGCAATTTCGATTGCCAGTTTTGATTGGATGTTTGTTAGATTCCCTCT T [676307] 676380 23 87.0 51 ..A.....C.....T........ GCAACATCCATGTCGTCAAAGTGCGATCGATAGCCAAGTTAGAGCCCCCCA 676454 23 95.7 50 ..............A........ ATAGGGTCAAATGGTGCTACTAAGTGTTTACGTTTGGTTAGAACTCCCAT 676527 23 87.0 50 ..C.....C.....T........ GATTCACCCCACGAAATTTTGAAATAGATACCTGCTGTTAGAATCCCCTT 676600 23 91.3 48 ........C.....T........ AGCTCTGGATTTTCGTAGATGTTACCGATGATTTCGTTAGAACTCCCT 676671 23 95.7 51 ..............T........ TTTTTCAAACTACTACTAGCGTTTGCTAGCTATCTAAGTTAGAACCCCCAA 676745 23 95.7 49 ..............A........ GATAAATGTACCAATCAGGTAGACCAAGAAAATATGTTAGATCCCCCCC 676817 23 95.7 46 ..............T........ AGAAAATCAGTTAAGGTTCGACTTTCGTATTTTGTTAGACCCCCCT 676886 23 95.7 53 ..A.................... TCTAAAATTTCAATATCATGTATCATAGTCTCACCTATATGTTAGACCCCCAA 676963 23 95.7 46 ..............A........ TGAATCCTCCTAAATAAAATTTTCAAGCAAAAGGTTAGAACCCTCC 677032 23 91.3 48 ........C.....T........ TACCATCGATCATCCCAAAATGATCCTTGTCAGCGTTAGATCCCACAC T [677033] 677104 23 100.0 49 ....................... TAAAATCTTTTTACCATATCGTTTAACAGCCTTTTGTTAGATCCCCCCT 677176 23 95.7 47 ........C.............. TCTTTTCAAACAGTTCTTCCCAAATTGTAGATTTGTTAGACCCCCCC 677247 23 100.0 50 ....................... TTGTGATTCCCATGTTTTAAAACAAACATTTTTTTAGTTAGAATCCCCCA 677320 23 78.3 0 ..............T..A..GTG | ========== ====== ====== ====== ======================= ===================================================== ================== 44 23 94.5 49 AATCCTCGAGAGGGGACGGAAAC # Left flank : TGAAGCCTTGGATCCAGCAGAGTATGTGTCTAGCTATACAGGAGGAGGGAAAGATGGTCTTCTTTAATCTTGATGATGATGAAAAAGAGTTTGCCAGAAAGAAAACAAAATTTTGTCTGGTTATTTACGATATCGTCAGCAATAAGCGGCGCTTGAAGCTGGCAAAGCTTTTGGAAGGCTATGGCGTGAGGGTTCAGCGCTCCTGCTTTGAGCTGGCTCTTGAGAAGCTGGACTTTGACTGCCTGGTGAGAGAGCTGAGAACCTTTTATCAGGCAGAAGAAGGGGACAATATCATTATCTATCTGGGGCATAAGGAAGAGAGGATTGTTTTTAATCCTTATGCTAGCGCGGAGTTGCTAGAGGATATTTTGTTCTTTTAAGCTGTTATTTCTGGGCTAGACATGGTATAATGGACTTAGGTTTTAGCTAGTTTCTAAGGGGTACAAGATGTGGTGGGGCTCTTTTGAGGCTTTATACAAGATATGCCGTTAGACCCCCCC # Right flank : GGCTGGGGGCTTTTTTACTTTCCCTCAGCTTCTTGCTTCGCCAAGAAAGAAGGATCTTGACTGCTTAAGCTTTTTTTAAACGCTTCAAAAACATTGACAACGCTTTCAAAATTTTATATAATAAGCTGAGTAGATAATAATCGTTCTAAAGGGCGCCATGAAATCGGTGAAAGATTCTTTTGCCTTTTTCGGGCGCTTTTGCAGTATAGAGAGGAGACCGTGTGAAGAAAGTAGAGTTACATTTATCAAAGACAAGACTAAAAGACGAAGAATTGGTCAGTAAGCTTCAGGGCTTTTTGATGGCGCAGATTTCGCCAGACTTTGCGACCTTTCTCCATGAGCAGGAGACCAATCCCTACTCGATGAATCTGAGTTCCACGCGCGATGAGTCGGTGTGGGTTGTCAATTTGCTTTCAGAAGAGGCGGAACGGCAAATGCTAGCTCCTTTATTAAACTTGGAAACCATCAAGCTAGATAGCTATGCTGAGGAAATCCTTGTC # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [43-50] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1358968-1356100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483471.1 Streptococcus cristatus strain NCTC13807 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1358967 32 100.0 34 ................................ TATACGTGTGTTTGATAATAGCTGTCTCAGGGAC 1358901 32 100.0 33 ................................ CCCAAACCCATAAATGAGTTACAGCATGGCGAA 1358836 32 100.0 35 ................................ GGAAGTTACTGGTGAAAATTATTATATGTGAGCAA 1358769 32 100.0 35 ................................ ATTTTAGGGTGGAAGGTCTTCCAACGTTCAGCCAT 1358702 32 100.0 33 ................................ AAACCAAGTTATCACCGTGACAAGAATGTATGA 1358637 32 100.0 33 ................................ GTTCCAATGTCACTTGATGTTACTTTCCACTTG 1358572 32 100.0 35 ................................ TGATATAAGCTGATAGGGAGAAAAATTGAACTGAC 1358505 32 100.0 34 ................................ CAGATAATTTTGAAAAACCCTTTATCTATTAAGG 1358439 32 100.0 34 ................................ AACAAATTTAGTGCCATCTGGCAGACCAGCTAAT 1358373 32 100.0 34 ................................ AACGTTATGGTGATTTGGTTTATTCTAAGACTAA 1358307 32 100.0 33 ................................ ATCCTATCCTTATGTGATGTATGGTCACAAAAT 1358242 32 100.0 34 ................................ ATCAGGGATGAACTTTTTAGGAATGATAATGCAC 1358176 32 100.0 34 ................................ GAAATCAATATAATTTCCTTTATAATACGCTACA 1358110 32 100.0 33 ................................ CTGTTGTTTCGGACACATTCTCACCGCTTGAAT 1358045 32 100.0 33 ................................ TATGCTAGGTTTGAACTCATTAGGTGTTGATAA 1357980 32 100.0 34 ................................ ACCATCCGCTACGAAGACCTGAACAAGCTAATAG 1357914 32 100.0 34 ................................ CTCAACAACTACCATTTTTATACGATTGATAACT 1357848 32 100.0 34 ................................ TGAGAACCTTTTTTGAAAGGGTCAGCGCCAGAAT 1357782 32 100.0 33 ................................ GGAAAAGCCTGGTTATTTGAAAATATTTAGTTT 1357717 32 100.0 34 ................................ CAGATGAATTGAAAAAGTATGCTCTTGATCCAAC 1357651 32 100.0 33 ................................ TTTGGTTGAAGCAGATAGGCTAGATTGACCGTC 1357586 32 100.0 33 ................................ CACTGGTCTAGGGTGTCTAATAGACGACTGCGA 1357521 32 100.0 35 ................................ CTAGCAGAAGAAAGCCTTATGCTTAACATCATCTT 1357454 32 100.0 34 ................................ TTATGTTGACATAAAATCTCTTGTAAACGGTAAG 1357388 32 100.0 34 ................................ AACGATGGATGTAGTGTATGTGAGCATGACTAAG 1357322 32 100.0 34 ................................ GAGTTACTGGCGAAAAAACAATTTATGCAGTAAA 1357256 32 100.0 35 ................................ ATAAAACATAGCATATATACCACGTGAAAGAATAG 1357189 32 96.9 35 .................G.............. TCAATCATCTTCCAAGCAAGAAAGTTCCTTATCTT 1357122 32 96.9 34 .................G.............. AGAAAGCTGCATCAAGCTTATTTGATACTTTTAC 1357056 32 96.9 34 .................G.............. TAGTTGGTGCAAAAGAAAGCCAGATGTAAAAATC 1356990 32 96.9 33 .................G.............. CAGTGTTTATCATAGTAGGAAGCTCATCGAACT 1356925 32 96.9 34 .................G.............. GTTTCAAAGAAACAACAATCACAAAACAAAATCC 1356859 32 96.9 34 .................G.............. ACATAAACTATTGACATTATTTTCATTTTATATT 1356793 32 96.9 34 .................G.............. TTAAAAAGCTCTAAATCAAAATTAGTTAGATAAA 1356727 32 96.9 34 .................G.............. ACTCCACCCTTTAAGAGCGTCATAACCAATGGTT 1356661 32 96.9 35 .................G.............. GAAGGAATGTTACACATCCAAGTGCGATTAAACCA 1356594 32 96.9 34 .................G.............. TCCTCAACTATACCTAAAGGCTTAATAAGTTCAT 1356528 32 96.9 34 .................G.............. GTAACTTGAGAAGACTGCTCCTGCTGTTGGGGTT 1356462 32 96.9 35 .................G.............. ACTGATGGTTTATAATGAATAATAAGTAATATAGA 1356395 32 96.9 33 .................G.............. ATTGTTTAGGTAGTTCAATGACTTCGAGATAAA 1356330 32 96.9 35 .................G.............. ATACATTGCCCGTTTAGCTTCATCTAAATAATACT 1356263 32 96.9 33 .................G.............. TGGTTGTTGATGAAATTAAGTCCACCCCAAATA 1356198 32 96.9 35 .................G.............. ATGACCTGCATTACGGCCTTAATGATGCCTAATAC 1356131 32 96.9 0 .................G.............. | ========== ====== ====== ====== ================================ =================================== ================== 44 32 98.8 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CTAAGACAATCCGTGGGGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCCGGTTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGCAGGAAAAGATTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAGGCTAAGCTTTTGAGTATTATTGACACTGAGTCTGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTCTAGAAACGATTGGACGTAATACAAGTTATGATCCTGATATAGGGGTATTACTCCTTTAAATAGTCTAGTGCGAATAGGTGTTGCTCATAAAAAAGAAGGACTTTCGCGCAAAAAATAAACAAAAACAAGGCAAAAATTCGAAATTTTAGAAGAATTTTCTTCTCTCGAAAGATAATGTTTGCTTAAAACAGTGCAACTACGCGCT # Right flank : AACACCCTCACGCTTGATAACCTCAAAATAACCAGTCGCTCCCTCCCAGAATGGAACCTACTGCGGTTAACAAAGAGCTAACCTCTCCTTTTGGTTGGAAGGTTATTTGTCAGTTTTAGAGCTATGTTGTTTCGAATGGTTCCAAAACCAAGCGCCCCAGATTCAAATAAATCCGATTCTTAAAAAGAGGGTCGGATTTTAGTTTTGTTTGATTTCGATTTTCTCCCTATAAATTTTTTGCAATATCTGCCTGTATTTTCCTGAGATTCTGTTATAATGGTAAAATATTTATTTAGGAGGAAGAGAATGAACTATATTTTGGAAATTTTACCCAGTCTTCTAAGTGGAGCGGCAACTACCTTGCAAGTGTTTGCTTTGGTCTTGGTTTTTTCGATTCCTTTGGGAATTATGCTGGCTTTTTCGATGCAAATTCGCTTGAAGCCCCTGCAATGGCTGCTTCATATTTACATTTGGATTATGCGTGGGACGCCGCTTTTATT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //