Array 1 88303-89368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTM01000011.1 Salmonella enterica subsp. enterica serovar Montevideo strain 50262 50262_c11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88303 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 88364 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 88425 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 88486 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 88547 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 88608 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 88669 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 88730 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 88791 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 88853 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 88914 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 88975 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 89036 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 89097 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 89158 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 89219 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 89280 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 89341 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105504-106997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTM01000011.1 Salmonella enterica subsp. enterica serovar Montevideo strain 50262 50262_c11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105504 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 105565 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 105626 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 105687 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 105748 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 105809 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 105870 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 105931 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 105992 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 106053 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 106114 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 106175 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 106236 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 106297 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 106358 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 106419 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 106480 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 106541 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 106602 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 106663 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 106724 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 106785 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 106846 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 106907 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 106968 29 93.1 0 A...........T................ | A [106994] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //