Array 1 451497-451647 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMM01000003.1 Thalassospira xiamenensis strain USBA 78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 451497 29 100.0 32 ............................. TTGTCGGGGGTCGATGCCGGTGCGTTCCATCT 451558 29 100.0 32 ............................. CCTTGGGCGGACATTCCCGATGACCGGCTCGG 451619 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTCTTCCCCGCGTGTGCGGGGGTACACCC # Left flank : AACACACAGCCTGACTTGCCTGAGAGTGTGTCGTGCGTGCTAACCCGAGCGCAGGAAGTGGTCGAAAAGAGCCTTAATGGCAGTTCCGAACTGATGGCCTTCAAACACCGGATTCAGGCAGAGAAGCCGCCGCTGTCACAGAATGGTCCAAAGCTTTAGTTCCCTGACCTTGAAATAGCGGCGGAAAACATCATCTCACTATAGCGTACTTGTTGTGCGCACTCGGCGCTTTGATGCCGTCTCAGGGTCACGTCTGGGACGGCATTTTCTTTATGCTGGGCGAGCTATTCCTCAAGGAACCTCGCCGGTTCCTTGGCGGCCTTGGAGTCTTGGATTGAATCACCTGTCATTGTAGATTCGAGTGCAACTTAAGGATAGTAAGATTGTTGACATAGAGAATAATGTGACTTAGATTGAATCATCGCCGACTGCTTAATAATTATGCAATTCTCGAAACTCTCTCAAGGAAATCCTGACTTTCCAATATCTTATGGGTTAGG # Right flank : CCAGAGTTAGGCGGTAACAGTTTGTCCTTTGCAACCTAGTGGCGGACCATGGGTTTAGTCCCTTCGTCTACGGGCGCGGGCATAATTCACAATGGAGTATTCTCTCATGGGAAATCTGTCTCTTCGTTCCGATTTCAGCAAAGCTGCGGTCGCTCTGAGCGGACTGGTGCCTGCTGCTGTTGTCGTGACAGGCGGAACCATCGGTGGAACTGGTGTTCCAATGTCCGACACAATGGCTTCAGTCGCCGGGCATATGGTTGAAGTCGCTCACACACTTGCTGCGAGCTTCGCCCAGGCTGGGTCCTCGGCTGATATGGCAACGACCGCAGCGTGGGCCGCAGTTGCACTCGCGCCCGTTGCTACGACGTTTGCCATTTCCAAGGCAGGCGAAATTGCGGCCCATGTTGTTGGTGACAAAGTCGGGCAGATGTTTGGGAAGCTCAAAAGCGCTTTCACCGGTGGCGGGATGTCGCGGGAGCTTGCTGCGCAAATCAATTCTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGTGTGCGGGGGTACACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 184327-184094 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMM01000005.1 Thalassospira xiamenensis strain USBA 78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 184326 36 100.0 30 .................................... CCAATGATGCGCCTGAGTACACGTAAAATT 184260 36 100.0 30 .................................... GAACGCACCAAACACCGTCCGCAGTTTTTG 184194 36 100.0 29 .................................... TTGCCAGTTGGACGGTGCGGAGCACTGTC 184129 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 ATTGTAGCAAAAGGTAAATTGTTGGGCAACCAAGAC # Left flank : GGATGACGTAGAAAAGGACGCGACATTCGTAATCCCCATCAATCTGGGAAAAGTCGCACCTCGAACCTTCATGGCGACTTACGAGATGTTTCCAGGGGAAGCTGCCACACTCAAGGTCAAGAAGGGGACAAAGCTAAATGGCTACGCGTTGATTTCCGAGACCGAGGAGGCCGGGAAAATACTGAAACTGATATCCAGTGCGTATGAGGATAGCGGGGATGACATCAAAACCGCGCTTACCGATGCCCTGAAGGACGCCCTTCCCAAGTCTGAAGATTGATTTTACGGGGAGGGGCGGTTGACCAGCACCAACAGAAAGAGCCCTCGAGAGGAAAATGGGTAGGACTAGATGAACTAAGGATATTGTTGACATCAAAGAACAAAACCGGATTCATGCAAAAAACCGGTCGAAATATCACTCGAAACAACAAGAAACTCGGCACTTTTCTGAGGAAGAATGCCGAGTTTCTTGTTGTGTGTCAGATACTTATCTGAAGCCT # Right flank : AGCTGGTCTTCGGTGATGTCGTGCCACGGGATTGTAGCAAAAGGTAAACTGCAAAGCAAAACGAATTACGACGAGGAGATAGCTTCCAAGACCTCGACATCATCATCGAACCAGCCGTTTCCGGCTAAGTCAAATCGTTCGTCGAGCATTACACACAGCTCAATGGCGGCCTTGGAAGGGTCGCCTGGGTGTTTACGAATGGTTTCTTCCACCTGAGTTCGAATGCTGTTGGCCATGTGGGTTCCTTTCAGTTTTTGGTCATTGTGTTTGGAGCGTGCGAGGGGCAGACGGGTCACCTCGTCAATGTTCTATAATATATCTTATGACAAATTTGTTGACGTCGTCCACAGATGGACCCCATCCAATAGTGACGTGAAATCAAGGATTTTGGAAGCATTTCTTACTGAGTTTCACACGAGGCATAAATAGCTATCGTTCAGCTTCTTCAAGCTATTACGTCAACTTTTTGTTGAGAATTCGCCCAATTGCACTTGAATTGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCAAAAGGTAAATTGTTGGGCAACCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 387301-388020 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMM01000005.1 Thalassospira xiamenensis strain USBA 78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================================================== ================== 387301 28 100.0 33 ............................ CTTGCCTGAGAAATACCCGCCCGGCCAGACAAG 387362 28 100.0 33 ............................ TTCCCCGCGTTTCGCAGTTTTCTGCGGGCTTCC 387423 28 100.0 33 ............................ TCTGACGGGTACCGGCCTGACATGGTCCAAAGA 387484 28 100.0 33 ............................ AGCCAGCGACAGCCCCCGCGCTTTCCAGGCTGC 387545 28 92.9 33 .............G...........G.. TCATTGATTGAATGGATACTTCCCAGCGTTTTG 387606 28 89.3 33 .........G..C.T............. AGAGTCGTAGACTCGATGAAACAGCTTGCCGTA 387667 28 78.6 116 .........GT.C.TAC........... GGCACAAGTTTGCGCGTGGATAGGCCGCAAATTGTCTTCCTCGTAATTACGGGGAAGATGCTTACCACACAAACTATTGTTCGTATGGTAAGGAGTACACCAAAGAACATCGTAAG 387811 28 78.6 92 ............A.TT.....A.G.T.. TTTGGAGATGTGATTATGTCGACTGGAAAGTCCGCCTTCCCTGCACTTGTGGGGGTGTTCCTATCAGACCTGAAGAGACTCCGGCTTCCCAG 387931 28 82.1 33 ..T.......TA.G.........T.... ACAGATTGCGGACGCTGGTAACGCATCGGCTGC A [387933] 387993 28 78.6 0 .............G.......AC.A.TG | ========== ====== ====== ====== ============================ ==================================================================================================================== ================== 10 28 90.0 49 GTCTTCCCCACGTACGTGGGGGTACACC # Left flank : GGATCACATATCTGAAGGTAAAAAACTCACCAAAAGGTACAAAGACCGCCGGGATACGTTGCTTTTCGACGAAATGGTGCTCTTTCCACTGGATAGCATTGCAGGAAGCCTTGAAATCATCCTGCGCCCCGGGAAGTTTGCTGCCGTCATCGTCTACGTTGCCCATACAGACCCGGACCGCCTGCCTGTACCGGTTGGTTTCATCACCGCAGATGCGTCGGTTGTACATGATGTTCACGCTGCATTGTCAGACAGTCTGGTGCATCGCGATAAATGGACGTCCGTTTTTCCAAATGGAAAGGGGGTGAACATTCTATATGATAAAGTTCATTCAATTCCCAAGCCGGAGAAGCCTCGCGCTGAAGAATGAAAGGATTACCGTTTGTGTTGACAAAGATAAAACATGGGGCTAGTTTTCTATCTCATGTTTGATTAAATTCTAGGCAGTTTTGTCGTGTTGAAAACTTAAATCGCGCCTTTACAAAGACTTAACCTTAAGG # Right flank : GCTATTTCGACACACGTTTGCAAGCCGAAGTGTCACTATAACGGGAAGCCGTAGCATGCGGCCGTGGACGCACTTAGGAGAGCACTGAGAGATGGCAACAGAAGATGAACCGGTTCTGATGACCGATTATGGTTCGTATTTCACATTCAAGTCAGAGAACATTAGCCCTCCCTATCGGGTTGTCTTTTGGGGGCCGGGCCGCGATGCAAAGCCTGAACTCTCTGAGTGTTATTGTATCGGTGTTGTTCATCAATCGCTTCAGGCAGATCGCGAAAGGGTGGCGAGACACAAAGGGATATCGGTTTCGGAGCTGACGCAAGAGATGCTCGTTCGCGGTGAATTGGAATTGGCGGCGCAAAGGCATGCCATCAATGTCGACTACAGTGTCAGGAAGGCTTTTTCCGAACAGAATTCGGGTCCAATCCTTGAGTACCTGCAAGAACAGATAAATGCTGAAATTGTGTTTCCGTGGGAAGCAAGCGATTTAGACCCGGAGTACA # Questionable array : NO Score: 4.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-1.39, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTACGTGGGGGTACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 28678-29010 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBMM01000011.1 Thalassospira xiamenensis strain USBA 78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28678 28 100.0 33 ............................ AATCCAACCGTCCAAGCGACGAACGGGCACAGC 28739 28 100.0 33 ............................ ACCGCGAGGTATCTGATCAGTTTCTCCGCAGAG 28800 28 100.0 33 ............................ CTTGCGACCGCTGCCGGTCATAAAAGACCTGTT 28861 28 92.9 33 ........C........G.......... GCGCCTTGAGCAGGAGCTTGAATATGACCTTTG 28922 28 92.9 33 ........C........G.......... CTGGGCTGCCAGCTATGCCTCCTCCCGGTAGTT 28983 28 67.9 0 TT......CGT....ACG.......T.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.3 33 GGCTTCCCTACGCATGTAGGGGTACACC # Left flank : TGAAGGCTTGAAGCTCATGCTTGATGATGTGGAAAAGCTGGGGCCTGATTCAGAAGTCTTTCAGCCCGCGATGCAGTGTTCTGACCCAGAAGCTACAGCATGGGCTTGGGCCGCAGGCATGCATCTTGGCTTAAAGCCGGAAATTATCATTGAAGATGATGCCTATGGCTCCTCCGGGGCAAATGTCCGAAGTCAGTTGCTTTCAAGTGAACTGGGTCGCCCTTACGGCCGGGTTACCGGTTACCTTGGCATCCATGGTTTGGCCCATGCAGGAATGACGTCTCTGCACAATCGGGGTGGAGCGGCGATGTTTCCTGAGATGAAGCGGTGGCGGCAGATTGAATGACCTGAAGAACCGAATCAGGCCAACAAGGATTACTGATTGTGTTGACAAGGACTAATCTTGAGGCTAATTTGTCATCCCATACTTGATTAAATTCTAGGCATTTGCGTGGTCGTGGAAATTTAGATCGCGCGTTTACAAAGACTTACACCTAAGG # Right flank : CATTAGGGTTATGGAGCGGCAGGAAGCGGAATACGCCTTCCCCGTGTAGACGGGGGTATGCCTCGTAGTGTTTGCCGCATCATTTATTGACCTGAGTCTTCCCCGTGCATACGGGGCACTATGTCTACCAGTGCGAGTAACACTTTTGTTTGGATAAAGAAAATGACCTGTTCCTTGAACCGAATCAAAGCCTGGTTGAAACAAACTGAAGCGGTCGACAATGAGCTTATCTCAAGTCACGTGTCGATGTGTCAGGGCGAAAACGTAGAAACTATCGAACTTCTCAGGAGTGATTTAGAGAAGTTAGTCGCCACATGCGCAGCCCTCCAGTCAGAAAATGACGAGTACGCCCGGTATATGGCTGAGGACAATAATCGTGCGGCGTTTCGCGGCTGGCAGATTATCAACGAAAAGGTTGCTGCGTTAGTAAAGGAACGTCGAGAAGGCACCCCGTCACAGGCTTAATAATCGCTGTGCCTCTTCCAACGCCTCTTGCGGCG # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTCCCTACGCATGTAGGGGTACACC # Alternate repeat : GGCTTCCCCACGCATGTGGGGGTACACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //