Array 1 32643-30678 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGR01000040.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E74C1 NODE_40_length_41306_cov_15.7654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32642 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 32581 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 32520 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 32459 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 32398 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 32337 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 32276 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 32214 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 32153 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 32092 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 32031 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31970 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31909 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31848 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31787 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31726 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31665 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31604 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31543 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 31482 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 31421 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 31359 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 31256 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 31195 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 31134 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 31073 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 31012 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30951 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30890 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30829 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30768 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30707 29 96.6 0 A............................ | A [30680] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8673-7180 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGR01000073.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E74C1 NODE_73_length_14248_cov_14.825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8672 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8611 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8550 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8489 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8428 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8367 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8306 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8245 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8184 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8123 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8062 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8001 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 7940 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7879 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7818 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7757 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7695 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7634 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7573 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7512 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7451 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7390 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7329 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7268 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7207 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //