Array 1 196-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCMD010000111.1 Streptococcus oralis strain E628 NODE_120_length_207_cov_0.590909, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 195 37 94.6 29 .......T.............T............... GGTATGAATGGAGATTTTTATGATTCAAC 129 37 100.0 29 ..................................... GGAATAGCCTTCTATGCCTGTGGGTATAA 63 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 97.3 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACT # Left flank : CTGTGGGTATA # Right flank : AGGGATGAATGGAGATATTTATGATTC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.97%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 23237-24394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCMD010000007.1 Streptococcus oralis strain E628 NODE_7_length_68896_cov_371.976650, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23237 36 100.0 30 .................................... TCATTAGCAATACCCATAGCAACCCCTTGA 23303 36 100.0 30 .................................... ATATTTCCAGGCTGGTGTGCCTTACAAACA 23369 36 100.0 30 .................................... TGGAATAGCCTTCTATGCCTGTGGGTATAA 23435 36 100.0 30 .................................... AGGGATGAATGGAGATGTTTATGATTCAAC 23501 36 100.0 30 .................................... ATTCTCTTGATAGCTATTGCTAGTTAGAGT 23567 36 100.0 30 .................................... AGGGTAAACGGTTTATAACTATAATAAATA 23633 36 100.0 30 .................................... TCCGTATTTTATCCAGCGCTATGGTTAAGA 23699 36 100.0 30 .................................... AATGAACCGTGGACTTTTAACGACAGCTCC 23765 36 100.0 30 .................................... ACTTCAATACTTTCAAGACCTTTTGAGCCT 23831 36 100.0 30 .................................... TCTGTAAATTTCCGGTTAGAGGAATGATTG 23897 36 100.0 30 .................................... TCGCTTCATGGATAACATTTCAAAAGCATC 23963 36 100.0 30 .................................... ATTTGTTTAAGAGTTATACCATGTTGCATA 24029 36 100.0 30 .................................... TTTGTCGAACAGTTAAGATGGCTTATCGCC 24095 36 100.0 30 .................................... TAAGAATGTTTTTGTGTTTGAAGTGCTAGT 24161 36 100.0 30 .................................... ACACGTTTAAGCCAGTGTCTCTCATTCCAT 24227 36 100.0 30 .................................... GTAAAGGGCAGTTCAGGGTCTGCTCGCACT 24293 36 100.0 30 .................................... CCACCGTGGACTCAAGCTTATGCTAACGCT 24359 36 91.7 0 .................................TCT | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCCCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : TACATAAAAAGCTACTCATTTTTTGAGTAGCTTTTTAACTATTCCCCCCTACACATAGCTCATTCCCTTATAGCAAAGGAAAACGGCTAGAGCGATAAAAAGTAGGGTTGCTCCGATTCGCTGGCTAGTACTGTACATCCTTCTCTCCCATTTGACTGGGAAGATGACTGCTAGAAAGGCACCGCCTACTGCACCTCCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGAATATAGGGGTTACGAGTTGCGTAACGCAGGACGATAATCGCAGCAAATAGTCCGTAAAGAGAAGTGGATGCTCCTGCTGCTAGGACTTTCGGTGTGAAGGCAAACACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAGAAGAACTGCTTGGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //