Array 1 219832-221324 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABA01000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_0784_R1 NODE_3_length_345375_cov_1.51336_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219832 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 219893 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 219954 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 220015 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 220076 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 220137 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 220198 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 220259 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 220320 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 220381 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 220442 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 220503 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 220564 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 220625 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 220686 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 220747 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 220809 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 220870 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 220931 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 220992 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221053 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221114 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221175 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221236 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221297 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237457-239238 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABA01000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R8_0784_R1 NODE_3_length_345375_cov_1.51336_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237457 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 237518 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 237579 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 237640 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 237701 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 237763 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 237824 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 237885 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 237946 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 238007 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 238068 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238129 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 238190 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238251 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 238312 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 238373 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 238434 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 238495 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 238557 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 238618 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [238660] 238660 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 238721 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 238782 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 238843 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 238904 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 238965 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 239026 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 239087 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 239148 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 239209 29 96.6 0 A............................ | A [239235] ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //