Array 1 90188-89771 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384409.1 Pseudomonas azotifigens DSM 17556 H610DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================== ================== 90187 32 96.9 34 ...............T................ CACTGGCGGGCGGGACGATCACCGTCACGCTCGC 90121 32 100.0 34 ................................ AACCGTCTCGGTGTCGATATGTCGCCAGGCGGCC 90055 32 96.9 34 ..................A............. ACGGCGGCGCCGTCGCTCATACGCGCGATGGACT 89989 32 96.9 34 ...........A.................... GCCGTGCCGCTTGCTGGCGTCTGCGTCATCCACG 89923 31 96.9 90 ......-......................... ATCACCGGCACCTCCTTGAGCTGCCAGGGCGGCGGTCACGCCCCACGCGGTGAAACTACGAGCGCGTCGACCTCGACTCCGCCCGCGCAC 89802 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================================================================== ================== 6 32 97.9 45 GTCACGCCCCACGCGGGCGTGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCGTCACGCCCCGCGCGGGCGTGTGGATTGAAACACGTTCCGTGTGCGGCTCACCGTCGGCGGGCAGG # Right flank : GAGCTAGGGACGCTGGACGCGATGGAGGTTGCGGCTTACCCAGCGCCCGTGCGGGTGCATGATTGACACAACGAGTTCATGGGCGAAGAGTTCATTCCGGCGTCACGCCCGGATGGGGCGTGTGGATTGAAGCGGCGCGGTACCGACCAGGCCGATGCTGTTATCGCCCTTACGTTCCATGCCGGCGGTGCCCAGCGACAGGCCCGTTGCGGCCCCCAAGAATGAGCCAAAGCTGACGCCAGTCAGTAATCCGCCCTTCGAGAACGGTGCCGAGGCAGGGGCAGGCGCGGTAAGATAACGACAATTGTTCTCGTTTGTTGGATGCCCAATGAGTTTCACCCGCAGGCAAGTGCTCGCCGGTCTGGCCGGTCTCGGTGTGGTCGGCGTGGGGGCCGCCGCCGGTGCCCGCTACTGGCTGGGCAAGCCGCTGTTCGCCGACACGCATGACTACGAGCTGATCGCGGCGCCGCTGGATGTCGAGCTGGTGCCGGGGCATCTCA # Questionable array : NO Score: 7.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-1.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCACGCGGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9170-8897 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384425.1 Pseudomonas azotifigens DSM 17556 H610DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9169 29 100.0 32 ............................. CCGCGCATGACATCGCAGCCGAGGGCCTGAAG 9108 29 100.0 32 ............................. GCCTGTCCGCTCTGCCTCAAGCCTGTCTAGGC 9047 29 100.0 32 ............................. TTCGATTTCTCGAAGTCCTCGGTGAAGACCCA 8986 29 100.0 32 ............................. TTCATGGATCGCGTCGAGGGCTCGCCGCTGGT 8925 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : CTGGCATGGTCGGTCACGCCCAGCGAACGCACCGGGAAGAGTAGCCCGAGGCCCTCATCGCGCAGCCGCCCCTCAGGCCACTTATCCTGAAAGCCGGGAATGGCCTTGCCGAAGTCATGCAGACCGACCAGACAGGCAACCCACCGCCCCACATGCTGGCGCTCCAACCCCAAGCCTCTCGACGCCCAGTCGAGGCTGCTATCGGGCTCATGCCGCAGGATGCTCTCGGCCACCGCCGCCACATCCAGCAGATGGGCCAGGACGCCGTGGCCGAATCCCTCGCCACTTTTGGCCCAGAGCCTGCGAGCCTGGTCGCTCAGGTCAGAGAATCCTTTCATCCATGTCTCGCCAGTGCTTGTGAGATGAACTGCAGCAATGCCTAGCGGGATCAAATTGCCACTATCATTCGAACGGAATCAAGCTCCGATCTTTAACAAAGAAAACCTGGTAGATTTTTGGCATTCGATTTTTCCCTATTAGATCAATCGATTACGCCAAGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25222-25612 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384425.1 Pseudomonas azotifigens DSM 17556 H610DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25222 29 100.0 33 ............................. GTAACCGTTCAGCTCGGCACCGAGGAACCCGTC 25284 29 100.0 32 ............................. CAGATCCAGTCCAACGAGGGCAAGGCCGAGCT 25345 29 96.6 32 ...........A................. GCCGCATTGAACGACACGTACGCCGCGGCGAA 25406 28 96.6 32 .....................-....... GGGTAAAGCAAATCTGCGTCCCATCCGCAAAC 25466 29 100.0 32 ............................. GCTGCCCAGGGAATGATCGCTAACGGAGACTG 25527 29 93.1 27 ..............T.....A........ CAATATTGGCCCTACGGGATACAGAAG 25583 29 82.8 0 ..C.C.......T....A.......G... | A [25585] ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.6 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCG # Right flank : GGACGGCCACGTGCACGCCAAGATGGGCAACACGTTCAGCGAGGCGTCTGAATACGGCGAGCGCTCCCCACTCCGTCTGCTCGCCGAGGACATCGTGGCTTCCAGGCGCGGCGCTGCCCGGCTAGCGCGGCTGGCGGTCGTCGCGGGCCAGTGCTGCCAGCAGCGCCAGTGACGCCGAATAATAGTCCTCGTTGCCGTTCTCGACCGGCGCGGCAGCACCCTCCAGCAGTGCGCCGATGGCTCTCACGCCTGTCGATGCCGGGTAGGGCGACAGCTCGCCGCTGCGCAGATCGACCCAGGCATGCGGCGTCTCGCAGCAGCGCCAGAACGCCGTGAACGGCGCCAGCTTCGAGTCGCTGGCCGGCATGCCACCCCAGTAGTGGTACAGCGGAACGCGCACGGCGTCGAAGCCGAAGCGCGGCGGCCAGCCCTCCGCCGGCGCGAGCGTGCCGTCGCGGTCGACCGCCAGCCAGTCCGGCGGCAGCGCATGGGCACCGAAC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //