Array 1 32-589 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZE01000116.1 Campylobacter concisus strain AAUH-48UCdp-a 1105456, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 32 30 96.7 36 ....T......................... TCCCAGTCGTAATGCAAAGCGATGACGACCCAAGAT 98 30 100.0 37 .............................. TATGTATCTGCAAGGCGTGCCACTGCAAAGAGTGAGT 165 30 96.7 35 ....A......................... TAAAGGCATGAGTGAGTGTGGCTTTGCAAGATCAC 230 30 100.0 36 .............................. TAAAGCAAGGCTAACCTCCTTTTCGTCCTTGTGCTT 296 30 96.7 35 ....A......................... CTAAAAAGTACTATATGCACTCTACTAGAATGACT 361 30 96.7 36 ....A......................... AATTGTGTTTGTTTCATAATAATGGCATCGTAGTTT 427 30 100.0 37 .............................. TCAAAGCTCATACGAGGTGGCAGCCGCCCACATATCG 494 30 100.0 36 .............................. TCCCAGTCGTAATGCAAAGCGATGACGACCCAAGAT 560 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.5 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : CTCATACGAGGTGGCAGCCGCCCACATATCGA # Right flank : | # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 6365-8109 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZE01000073.1 Campylobacter concisus strain AAUH-48UCdp-a 1105413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6365 30 100.0 37 .............................. AAAAGACTACTAAAGAGCCTTTTTCCGCTAGGTTGAG 6432 30 100.0 34 .............................. ACACGATTAGCTGGCTCTTGCAAACTACGATCAG 6496 30 100.0 37 .............................. TTGATCACCGTATCAGCCTCACGCCCTAGCACAGTCT 6563 30 100.0 36 .............................. ATTAGGCTAGTAAGAGAGCCTTTCATATTTTTCTCA 6629 30 100.0 36 .............................. AATTTGAAATAGGTTTATCAATATCTGCTGTATTAT 6695 30 100.0 35 .............................. AACAAGGTGCAAACAGAGCTAAAAGCCCCTAAAGC 6760 30 100.0 37 .............................. TTTTCAACTAGAGCCTTTCTTATCTTGCCCTCGCTAT 6827 30 100.0 36 .............................. ATATGGTAATTTTTGCAGCTTCTGGAGCACTTGCTA 6893 30 100.0 35 .............................. ATCCTTTATGATCTCAAATTTATCTACATAATTAA 6958 30 100.0 35 .............................. ATAGATGATGAAACATTAAAGGCAGAGATTTTAGA 7023 30 100.0 35 .............................. TTTAGATTAAATGCTTTCTTCGCCATTTTGCTTTG 7088 30 100.0 34 .............................. TTTTACTTTTGCCACTAAGGGGCGTCAGATATAA 7152 30 100.0 34 .............................. CTATGTCATACCCAAAGCCCTCAATGTTTTCTGG 7216 30 100.0 34 .............................. AGCTCAAATGTAACAATATCCTCCGCTTCATCAG 7280 30 100.0 37 .............................. TAGAAGGCACGGAAGAGTTTGACCTTTTTGCCTTTAA 7347 30 100.0 36 .............................. AGGCTTCATCGCGCGTAATAAATGTATCGCTCATTT 7413 30 100.0 36 .............................. GGGCGACTATTGGTAGCGGAAAAATAAGCGATCAAA 7479 30 100.0 37 .............................. AATGATTTGACTGCATCGTCTTGCTTTTGCCAGTATA 7546 30 96.7 36 ....T......................... AACAATCTCAAAAACTTGTAAAAAATAGCGTTGTTA 7612 30 96.7 37 ....T......................... GCTTTTGTTGTCCCTATTTATGCTTCTTTTGTGGCTA 7679 30 96.7 37 ....T......................... AAGAAAAGTCATAATTGATAGTTTCGGTTGATTTGAA 7746 30 96.7 36 ....T......................... TCATACTCTAATGAGCAATAAAGACAAGCTAATGCA 7812 30 96.7 38 ....T......................... ACGGTACTACTCAAGGCGGTTGCATTGATTGTTCTTCA 7880 30 96.7 37 ....T......................... CCAGCCGTGATAGTTGCGTCGGTGTTTTTTGCACTCA 7947 30 96.7 36 ....T......................... AAAAATGTTCTTGGCTATGGTCTAAGTAGTGGTTTA 8013 30 96.7 37 ....T......................... AGTTTTTTTGAAAATTAAAAAGAGGAGTAATAAATGA 8080 30 93.3 0 ....T.............A........... | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 98.8 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGACACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACTGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAATGACGCTATGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGATGCGCCTTATGAGGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGTGTTTTTTAAGATTTTAGAATGCTTGAAATTTAGGGCTTGGCGTATTTACACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAACGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : TAAAGGCATGAGTGAGTGTGGCTTTGCAAGATCCCATTAGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTATAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 10185-9103 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZE01000047.1 Campylobacter concisus strain AAUH-48UCdp-a 1105387, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10184 30 100.0 36 .............................. TTCGGTTGGGCTCTAGGCTTGGGTATTTGAAAAAAT 10118 30 100.0 35 .............................. TAAAGGCATGAGTGAGTGTGGCTTTGCAAGATCAC 10053 30 100.0 36 .............................. TTCGGTTGGGCTCTAGGCTTGGGTATTTGAAAAAAT 9987 30 100.0 37 .............................. TATGGTTGTGTATTTGTTTCTTGATGAGTGTCACAAT 9920 30 96.7 38 ............................G. GGGCGACTATTGGTAGCGGCAAAATAAGCTATCAAACA 9852 30 96.7 34 ...............A.............. TACCAGCGTGCTATTTCTTGCCTTGTTGCACCAT 9788 30 100.0 36 .............................. TGGCAAGGATTGCAGATAGATTTTCTGCCAAATTGG 9722 30 100.0 35 .............................. TTCATCTTTTTTAGTTTTTCATACTGATGGTGTTG 9657 30 100.0 34 .............................. CAAACTACAAGGGTATGAAAAAAATCAAGAAAAA 9593 30 100.0 36 .............................. GATCTCTAAAATCAAAGTCGTTTGCACTAGTGGCCA 9527 30 100.0 35 .............................. CCGGTAAAAATCAAGCAGGTCATAAGGCTGCATTT 9462 30 100.0 34 .............................. CAATTAGAGCAAGAGCTGGGGTTTGCACCCTGCC 9398 30 96.7 38 ......T....................... ATATGTCTTGCTCGTGAGCCTTAGCCCAAGCCCATCTC 9330 30 100.0 34 .............................. ATGCAACATTTGCAGCACCATCTATGATACTAAG 9266 30 100.0 37 .............................. TAAAGCACGTCGGCGATAAAGAGAAAATCGCACTTTT 9199 30 100.0 37 .............................. CCTGAAAGCGTGCAGACTGGCACATTTATGTTTTTAG 9132 30 90.0 0 ..............T..........T...T | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 98.8 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : CATGAGTGAGTGTGGCTTTGCAAGATCA # Right flank : CTTAAAAAAAGATATCCTTAAGCAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGACGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTTTCTTCATAATACTCTTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //