Array 1 333946-333798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIB01000003.1 Xanthomonas albilineans strain GPE PC86 Xal-GPE_PC86-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 333945 28 82.1 32 CC.AG.G..................... TTTGACCGCGAACTCATGCCCGTCTTCCCGCT 333885 28 100.0 32 ............................ AATGCGCTGGAGCAGCGGCTGAGAGCAATCGA 333825 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.8 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGGCGTGCCATTCACCGGCTTCCTCTACGCAGGGCTGATGATCGACACCAGTGGCGCGCCGAAGGTGATCGAATTCAACGTGCGCTTCGGCGACCCGGAAACGCAACCGGTGATGCTGCGCCTGCAATCGGACCTGGTCGATCTGGTCGAGGCAGCGCTGGATGGGCGTCTGCATGCGACCCAAGCGCAGTGGGACCCGCGCCCATCGCTGGGGGTGGTGCTGGCCGCGGCACCGTATCCGGACACGCCCGTCACCGGCGAGCCGATCACCGGCCTGGAGGCGGTGCCCGCCGATGCCAAAGTGTTCCATGCTGGCACCGCGCTGGATGCGCAGGGGCGCGTGGTCAGCGCCGGCGGCCGCGTGCTGTGCGTCGCCGCGCTGGGCGATAGCGTGGCCGATGCGCAGCGCCGCGCCTATGCCGGCGTGGCCCGGATCCACTGGGCCAGCGCTTTCCACCGCCACGACATCGGCTGGCGCGCCATCGCGCGCGAACGCGGCG # Right flank : ATCAGGCGCTGGATCGCCACGCCAATGCCTCCCATTCACTGCCGCACCCGGTGACGGTGATCGCGTCGCGCCAACCACGGGTGCGCTATCTTGTTGCGGTGCACACAGCCTCGCTCGAATCCCACCTCAGCCGCCTCTGGGCACATGAAAAGGCCAGCTACGGCCTGCGCGTGTTCATCGCGCTGGCCGCGGCGATGGGTCTGTGCTGGCATCGCCAGCAGTTGGATGCGCTGCCGGCGATTTTCCTCGGCACCATCGCCAGCGCCATCGCCGAAACCGACGACAACTGGCTGGGGCGGATCAAGTCGGTGCTGCTGTCGCTACTGTGCTTCGCCGCGGCCGCCGCCGGCGTGGTGGTGCTATTCCCGTATCCGCTGGCGTTCGCTGCCGGTCTGGCGCTGTCCACCTTCGCCCTGACCCTACTCGGCGCGCTCGGCGAGCGCTATGCGTCCATCGCCCAGGGCACGGTGGCGCTGGCGATTTACGCGATGATCGGCATC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2767840-2767987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIB01000003.1 Xanthomonas albilineans strain GPE PC86 Xal-GPE_PC86-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2767840 28 96.4 32 A........................... AATCGCCGCAGCGCCCGCACTGACCGATGTAC 2767900 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 2767960 28 89.3 0 ........................TGC. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : ACTGACGCATTTGACGCACTACATCGTAAGTCCTACGCGCGCGTACGCGCGCACACACCTCATGAGGGAGTTTCGATGTGACCCGTCCAATCTGTCAGTCCCTCCCGACTTGGAGCACTTGACGATGAACACGACGATCCTGGCCCTGGACCTGGGCACTCGCACTGGGTGGGCACTGCAGCACTCGGATGGCACCATCACCAGCGGCACCGAGCCCTTCACCCCGCAGCGATTCGAAGGCGGCGGCATGCGCTTCCTGCGCTTCAAACGCTGGCTCAACGAAGTGCTCTCCACCGCCAATCCCATCCACACGGTGTACTTCGAGGAGGTGCGCCGACATGCCGGCGTCGATGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : AATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTGGACAGAACCGTGTCAGAGCTAAGCGTTGCAAGGGACTACAAGGCTGACTTGGCGCAGATCGAACAGATCGATGCGACGCCATGGACTGCGGCAAGTCACGCGGACATGACCTCAGAACTGAAAACCTATGCGCGGTCGTAAACCTCTGCCTGTAGCAATCAAGAAGATCAAAGGCACGCTGCAAAAATGCCGGACCAACCCGCATGAGCCCCGTCCCGACGGGCAATTGGGTGAGCCACCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACGTATGCGGTAGAGAACGCACCACTCGGTTTATTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGCGAGGCGCTGGCA # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3323262-3325546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIB01000003.1 Xanthomonas albilineans strain GPE PC86 Xal-GPE_PC86-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 3323262 31 100.0 33 ............................... CGCATTGACTCCCAGCGCGCATACGGCACTGCA 3323326 31 100.0 34 ............................... CTCGCGGGATACGCCGGAATAGCCAAACCCCTTG 3323391 31 100.0 33 ............................... TGGATCCGCCGCATGTCCGAACAGCACGGCATG 3323455 31 100.0 35 ............................... TTGGTAGCTGCGCGAGACCTGTTCGAGCACCATGC 3323521 31 100.0 35 ............................... TTCATAACGGGGATGCTCCTTTCAGTGTCAGATGG 3323587 31 100.0 35 ............................... CGCAATGATCGTGCGGACGCTGAGGCGATGCAGAG 3323653 31 100.0 36 ............................... TTGCGCGAGCTAGCCTTCTTGGCGCTCGCGCTTGGG 3323720 31 100.0 37 ............................... GTTTGTCGTGCCAGCAACGCTTGGCACTCGGTACGGG 3323788 31 100.0 36 ............................... TTGCACAGGGGCATTCGCCCCGACAATTTCATCGAG 3323855 31 100.0 35 ............................... AGCCGTAAGCTGCGCGCCGTCGTAGTAGTCGCGAG 3323921 31 100.0 34 ............................... TACGACGTATTGCCTTCCCGACTCAATCTGTACG 3323986 31 100.0 35 ............................... GACCTTGCTGGCGTACTCATAGAGATTGATGGTCG 3324052 31 100.0 35 ............................... GACTTCATCCTGATTGCCCAGCAGGGTCTGCAACT 3324118 31 100.0 35 ............................... GGTATACAGCTGCGCCGTTGGCATCTTGGGAGTGG 3324184 31 100.0 35 ............................... TTGGAAGTGCTCGGTATCGCCAGCGGCGAGGGCCT 3324250 31 100.0 34 ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3324315 31 100.0 37 ............................... AAGCGATCCGATGCGGTCGGCCATGCCGGCCTTGACG 3324383 31 100.0 35 ............................... CGACCGAGACCGACTCGCCTTCCAGCCCGCGCAGG 3324449 31 100.0 34 ............................... GTGCTCCTCGATGACGGATCCGCAGTCGCTGCAG 3324514 31 100.0 34 ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3324579 31 100.0 38 ............................... GCATGTGCGAATGCACGACGGTCGGGGCCGAATGATGG 3324648 31 100.0 36 ............................... GCCTAGACCTCGGCAAAGAACCCGCCTATGAGCCGG 3324715 31 100.0 36 ............................... CTTTGGAAATGCTCACCCACCCCATGCGCTATCTGG 3324782 31 100.0 36 ............................... ACAGTCTGGGCCTCTTGAGCGATGCGCTTCAGCAAG 3324849 31 100.0 35 ............................... ATCCTGGCTATTGTCGCAATTGTCAAGGGCGGCGC 3324915 31 100.0 35 ............................... GAGTTCAGCCGCGGCCCGCTGGTCTGGCGTTACAG 3324981 31 100.0 34 ............................... TCATCTGACTCTCCCTCACTGTTCAAATGGGCAA 3325046 31 100.0 34 ............................... GTACTGATTCCATCCGGGCTTGCTCCTCGTGGGC 3325111 31 100.0 36 ............................... AACGGTAGGAAGGCCGCTGAGGACTGGGCGCGCGCG 3325178 31 96.8 38 ........T...................... GATTTCGTCCTCTCCGTAGCTGTATGGGCTGATGCCAG 3325247 31 100.0 37 ............................... ATGTACTACGTACACGGGAGGGCCATCGCATGAGCCG 3325315 31 100.0 37 ............................... GCCAGTCAACGTGGAGAGATTCACGGCAGCGCGGCTT 3325383 31 100.0 37 ............................... GGCACAAGCGTCCAGCCATCCGGCACACCCTGCAGGC 3325451 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3325516 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ====================================== ================== 35 31 99.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGACCCTCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3507902-3507759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIB01000003.1 Xanthomonas albilineans strain GPE PC86 Xal-GPE_PC86-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3507901 28 85.7 32 C.GAG....................... TATGATTGTCAGATCGCGTCCGGACGTAACAG 3507841 28 100.0 27 ............................ AGCTGAATGAGCTAATTGGTTCGTTCT 3507786 28 71.4 0 ...A.................CTGCGGG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 85.7 30 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGACCCGGCGGGCCGCGTCCGACAGCCAGGTGGCGTAGTCGTACTTGGAATCTGTGTCGCTATCGCCCTCATTGCCCTTCAGCTTGGCCTCGCGCCGCGCGTCGATGAACGCGGCGATGGCCGAGCGGAAGCGCTCGGAGCGGGTGAGATGTTGCGGGTCTTCTGTCATGTGGAATCCTTTCGTTCGCTGGAGTGAACCTGCATGTAGAATCCCCACGGCAGCAAGCCACCGTGGGGTGTGGGAGGGGTATCCCCTCAAACGGCTCTTCTGAAAAAGTGTCGTGAGAGCACTTCCTGCATCCTTCTTTGCACAGCAGTCCTTTGTGCGTAGGTCCGGGTTCCAACCGGCTTTGCTGCTTCGGCCCGTCATCGTTCACAGCGATGACGGGTTTTTTTTAACCAGCTGTATGTGATAATTTTGTTCGTAGGATTTTATGGCGCATTTTGCTACTCTAGCCAAAATTTTGTGAAATGCAACAACATTGATAGCGGGCTGATTT # Right flank : CACGGAAGCCCTTCTCATTCCCACGACTTGAAGCCAAGTAAAGGGTGATACCCCCACTTCTTCCCGCCCTTGCCCTCAGGCACGTTCACCGTCGCCAGCCGCTTGGCACAGTCCTGCAACGACAGGTCGAGCTGCTCGGCCTGCTCGGTGAGCAGCGTCATCAGGTCGTATTCGCCCCAGGGCGCGATGCCGGGACCAGGTTCGAGCGCCAGCGGCGCGCACGCACTCTGTTCCACGACCGGGTAGAGTTTTTTGTCGCCGCGATGGTCATCGTCGTCTTCGATGCGATGCAGCACCACGCGCTCCTCGTGCTCATCGGGTAGAAACACCAAAGTGGCCGTTGGCCTCGTGTCGTGACGGAACGGCTGTTGTTGCGGCAGTACGCCGGTCAGCATGGCGTGCGGGTATTGCCATGCGCATGCCGCATCCAAGGAGAACGGCGGGGCGCTGCGCCGGGATGGCGGAGCGGCCTCGCGCGATTTGGGCAGCATGGCCTCGCT # Questionable array : NO Score: 3.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:-1.5, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3512362-3513769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIB01000003.1 Xanthomonas albilineans strain GPE PC86 Xal-GPE_PC86-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3512362 28 100.0 32 ............................ AACGCCAGCGGCCAGATATACAACTTCTTGCA 3512422 28 100.0 32 ............................ ACATGGCCCGGCTGCGGGACGCCGGCAACGGT 3512482 28 100.0 32 ............................ ATCTTGCTCTTGGGTGGGCGGCGCTTCTGGCT 3512542 28 100.0 32 ............................ TGACACTTAGTTAAGCTTTTCATGGATCACTC 3512602 28 100.0 32 ............................ CTACGGCGACGATCAGCGTCGTGGCTTGTGGC 3512662 28 100.0 32 ............................ ATTGCAAACTATCAAAGCGAGTTTTCTTCTTA 3512722 28 100.0 32 ............................ ATCGTACCTCGCTCAGGAGGTCGGCGATGCGA 3512782 28 100.0 32 ............................ TACGCAGACTGGGACGCGGCGTTCATGGAGGC 3512842 28 100.0 32 ............................ TCGATAAGCGCACGGCCAATGCCGGTGCTCTG 3512902 28 100.0 32 ............................ CAGCCCGCAACAGATCGAGGCCAACACGAAGG 3512962 28 100.0 32 ............................ TCGCTGCGCCATAGATTCCGGCCGTCCACGTC 3513022 28 100.0 32 ............................ TCCCATGCTAATCAGTCCCGTCTATTACCCAC 3513082 28 100.0 32 ............................ AAAGAGGATTACCGATGGCTCACGCACCGGGA 3513142 28 100.0 32 ............................ ATGCACCCTGCTTGTCATCAAGTCGCGGCAAG 3513202 28 100.0 32 ............................ GATGCGCCAGGCCATCGAGGAAGGCGGGTTAA 3513262 28 100.0 32 ............................ TTCTGCGCCGCAATCACAATAGTCTGCATGAT 3513322 28 100.0 32 ............................ ACAGCAGCAGTCGCGCAAAGCAAGCCGCAAGC 3513382 28 100.0 32 ............................ CATCGAAGCCGCACTTGCTCCTGATGCAGCGG 3513442 28 100.0 32 ............................ ATGTCCTGCGGCAGCAACGCGCCGATGGGGGC 3513502 28 100.0 32 ............................ CGGTGCTGCGCAAGTGATATCCCGGATCGTGA 3513562 28 100.0 32 ............................ TGGTGGCCGCATCCGCGCAGCACTTGCGCAGG 3513622 28 100.0 32 ............................ ATTAGAGCAATATATGTGCTTGCCATCTATGT 3513682 28 100.0 32 ............................ CGGCTGAGACAAGGCACAAGGAGCCGGTCATG 3513742 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGTGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTAAGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATTTGCTGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAGCGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAATAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3687327-3687179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIB01000003.1 Xanthomonas albilineans strain GPE PC86 Xal-GPE_PC86-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3687326 28 96.4 32 A........................... AAAGGCTGACTGGATGACCTGCCAAATAAGGC 3687266 28 100.0 32 ............................ TGGTTAGGGTGGGGCAGGCGCACTTCGCGAGC 3687206 28 89.3 0 ........................AGT. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GAATTCCAGCGCCTGGAACGACAACAGCATCGCGCTCGGCGCGCGTGCGGATACCTCGACGTTCCGGGTCAACGGGACGGCGCTTGGTGCCGATAGTGGGGCGTATGGCATCGATGCCACTGCGATTGGTGACGGCGCGCGGGTCGGCACGTGGCTGGATGATGCGCGCAACCACGCGCCGAAAAGTGCGGTCGCGCTGGGGGCACATTCTTACGCCAGCCGCGACAATAGCGTGTCGATCGGTGATGTTGGTAACGGTCTCACCCGGCAGATCACCAGCGTGGCCGCCGGCACCGAGGCGACCGATGCGGTGAATGTGGATCAACTCGATGCGGTCCGGCAAGTCGCCGAGGGCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : ATGCTCGGGGCATCAACCGGCCCCGATCCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCTCGCGTGCAAAATGGAAAACTTTTTTTGGAAAAATCCGTGTCAGAGCTAAGCGCTGCAAGGGATTACAAGGCTGACTTGGCGCAGATCGGACAGATCGATGTGACGCCATGGACTGCGGCAGCGCACGCGGACATGACCCCAGCCGAACCCGTAGAACTGGAGCCCTATGCGCGGTCGTAAACCTCTGCCTGTGGCCATCAAGAAGATCAAAGGCACGCTACAAAAATGCCGAACCAACGCGCATGCGCCCCGCCCCGACGGGCAGTTGGGCCAGCCGCCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACCTATGCGGTAGAGAACGCACCGCTGGGTTTGTTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGTG # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //