Array 1 663487-663995 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGON01000002.1 Legionella londiniensis strain NCTC12931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 663487 28 100.0 32 ............................ AGTAAGTAGTCGAGGATATCCTATTTATAGTA 663547 28 100.0 32 ............................ TTTTTGCTTAATCATTTTCGCACCCTCCTTAA 663607 28 100.0 32 ............................ AAACGTCCTGAACAACAGCGCACAGAAATACT 663667 28 100.0 33 ............................ TAGATAAATGGCGTTCGCTTCTGCAAAACGCAT 663728 28 100.0 32 ............................ AAATGAACATCGAAGTCGTGATTCGCGGCGAT 663788 28 100.0 32 ............................ TCAGGTTTTTTTTAGATTACGCCATGTAGTCT 663848 28 100.0 32 ............................ ACATTATCAGGGGTTGTGTAGTTGTATTCCGA 663908 28 100.0 32 ............................ AAACAAAGACAAATACGTTTTGAACAAAATCA 663968 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTAACTGCCGCACAGGCAGCTTAGAAG # Left flank : TCAATCAAAAATGAGGCGATTATTTAAACGTGGTTCGATGACAGTGGGTGATATCAGGCAATACAAAGCTAAAATGTTTGCCAAAAGTATTGATAACCCTTATCTTGAATTGGTAAGTGGATCAAATGGGTATAGATATAGGCGCTACATTGAATTTGGTGAGTTACTCGACCAGCCAGTTTATGGAGAATTTGATCGGTTTGGTCTTTCCAAAACAGCCACTGTTCCCTGGTTTGATTAAATAAAAGAATATGAAATCAGTTAAGTTCGAAAGGTTGAAGTGGAAGTTTGTAATTTGTTCAAATACTTGAGTCATTTTTCTAAATAAGATAGAAATAATAGGTAATTTGAATATTTCATACTTCAAATTACCTATTATTTCATCTAATGTTAATTTGTTATTAAAATCAAATGGATATAACTAATTGGGAAAAATTGGGTAAATCAATTTTTTCCAATTATCTCTTTGTTTTATCAGTTTTTTTATGGATGATGTTACA # Right flank : GAATAATAGAAAAGATTGAAAGAGTTACGGTTGAAAGTTGTGTACGGAGATAATTGAAAAAAAGGTTGGGTGGTGTAGCCTCATTAACTGAAGAAGGTTAATGGAAAAAATCCAAAGAGGAGACACCACGATGGGAAACGATACCGTTGTTTCATTCAAAAAACCAGTAGTGATTGATGATTTATTGACAGAGACACTGAGAGCTGGGGCAAGGCAATTATTGGCAGCGGCGATTGAAGCAGAAGTAGCAGAGTTTCTGGAGACTCATAATGGAGCGGGAGAAAAAGCCCGCTTTGTACGGAATGGTTATTTGCCAGAACGAGAGATTCAGACAGGAATAGGCCAAGTGGCGGTTAAAGTTCCACGGGTACGCGACCGTTCGAAGTCATCGGATGGGATTGGCTATGTTTCCAATCTGGTCCCCAAGTATTTAAGACGTAGCAAAAGCCTGAATGACTTTTTACCGTTACTCTATCTGAAAGGGATTTCCACGAATGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2347626-2344254 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGON01000002.1 Legionella londiniensis strain NCTC12931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2347625 37 100.0 37 ..................................... CCATACAAGCTCGCCACGACGTTCTATATATAATAGT 2347551 37 100.0 35 ..................................... TCTTAGCTCTATTACCAAACAGAGCTTTCATAGAA 2347479 37 100.0 40 ..................................... TAGTAAACCATACAAACATGTATTCGGAATATTTTAAGCT 2347402 37 100.0 35 ..................................... TTCATCATTCCTCGGAACATTGCGACTAACTCGTC 2347330 37 100.0 35 ..................................... TTCCAGTGCGAATACGTGCCTAAAACCTTTTTTAA 2347258 37 100.0 36 ..................................... CCGGTAAGCAACAAAGCGAGCGCGCTTAACTGCTGT 2347185 37 100.0 36 ..................................... TATAATACTTAATCCACATAGTAAACTTATTATTGC 2347112 37 100.0 33 ..................................... TCTGAAGCACAAGCTTTAGAAAGAGAGTTAGGG 2347042 37 100.0 37 ..................................... CATTTCATCATCTGTTTTACTCATCAATTACTCCTAA 2346968 37 100.0 36 ..................................... AGGACAAACTCCATTATGAAACTCCATAGCCATAAT 2346895 37 100.0 36 ..................................... AAATATTGCATTGTCGGTACAATCATTAATATACCA 2346822 37 100.0 35 ..................................... TAATAAACACTCTTCTTAGCTTTAGGAACATTAAC 2346750 37 100.0 35 ..................................... GAAATATACTACATTTGTCTGGAGCTTGGTTATGA 2346678 37 100.0 37 ..................................... TAGAAAACATACTTGTTACTCCTTGACTTGGCATAGC 2346604 37 100.0 35 ..................................... TCTAACTTGGTGTCAATATATCCCAACTCAAACCT 2346532 37 100.0 34 ..................................... TTTTGCCTTTGCACCCATCGCACCTTTTCATAAA 2346461 37 100.0 35 ..................................... TTCGTTAGAGTTGCTGACCAGGCTGGAACACCGGA 2346389 37 100.0 35 ..................................... ACATTTTTAAGAATGGTAGAGGCCATCCCACCATA 2346317 37 100.0 34 ..................................... ACCAAAAAACTATTGATATGTTAAACACATTGAA 2346246 37 100.0 37 ..................................... CTATTCTACTACTGAACTACCCTGCAATAACTATTGC 2346172 37 100.0 35 ..................................... TGCAGTTTTTCAATTCGTCGTTTCAACGAGCTTAG 2346100 37 100.0 33 ..................................... ATTGACCGCACAAGTATTTACTCGCCAACCATA 2346030 37 100.0 35 ..................................... GGTGGAAACCCTGTAGTGGTGGAACATTTAGAGAA 2345958 37 100.0 35 ..................................... TAAAAAACATGCTCACACTATTAAAAAGAATGGCA 2345886 37 100.0 35 ..................................... ATGCTCTTGAAAAGTATTATAAAGGCTTACCTATA 2345814 37 100.0 36 ..................................... CTATTCTTACTCTCTCCATAACCTGTTCCCCTGTTA 2345741 37 100.0 35 ..................................... TTATTAAACCAGTTTTGCAAGCCTTGACTATTAGG 2345669 37 100.0 37 ..................................... CAGGTTTAGACATAGCCACACCTATAAGACCGTTAGT 2345595 37 100.0 36 ..................................... TGTCTGTATTGTTCATGTTATATGCTCCTATTTAAC 2345522 37 100.0 33 ..................................... TAATAACCCGTGTACCAATATCTATCTTGAAGA 2345452 37 100.0 36 ..................................... TATTGATGACATTAGATAGACTTCTATCAATTGTGT 2345379 37 100.0 35 ..................................... ACAATTTAAGAGCAGCTAGAAATCTTATCTAACAC 2345307 37 100.0 36 ..................................... ATCAGCCAGCGGTTGCGCATCTGCAATGGGTATGGA 2345234 37 100.0 34 ..................................... CCATTATTTGCGCCGGCCTGGATGGCAAGGTGTT 2345163 37 100.0 37 ..................................... TATATGGAATATGCTCCACTATCTTCTCAAGAGAAGA 2345089 37 100.0 33 ..................................... TGGGAACTGCTCATCCATAAATTCTATTACAGG 2345019 37 100.0 34 ..................................... TAAATGGGGTCGGTAGCAGCAGCCTGTACAACAG 2344948 37 100.0 35 ..................................... GATATGTCTTGGTTGTTTTCGTCTCCTGGTTCTGT 2344876 37 100.0 39 ..................................... TAGTATGTGGAAAAAAGGGCTAAAGACGAACTATAAAGT 2344800 37 100.0 36 ..................................... ACAACATACTTCTCAGTACCCCCGCCAAAAGTAACA 2344727 37 100.0 36 ..................................... TTAATATCCAAGACAGGCACTCCAATTTTTTCTGTG 2344654 37 100.0 39 ..................................... TAGTATGTGGAAAAAAGGGCTAAAGACGAACTATAAAGT 2344578 37 100.0 36 ..................................... ACAACATACTTCTCAGTACCCCCGCCAAAAGTAACA 2344505 37 100.0 34 ..................................... TCTCTTCATAGTGGGTCACCCATGGACCAGCGTC 2344434 37 100.0 36 ..................................... TCGGAAGAAGCGATGCCTACGATATCCCCAGAGGAA 2344361 37 100.0 34 ..................................... TACGAATTTGCCGGAATCCACACGGCAGGACGTA 2344290 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 47 37 100.0 36 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGCTCAAAGTGCTTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT # Right flank : TTTAATAAAAGGCACTGGTAGGGAGGTAATCCTCCCATTTTTAACTGACGCTAAAAGTAGAAACCTAGGCTGCTAGAGCCAATTTTCTTTTGGGTGGTATACCTCCAATTGCCGAGTTAGGACGTTCATTGTTGTAAGACCAAAGCCACTTGGTGGCCTGTTCTTGGACTTGTTCGATACTCTCAAATAAGTATTGATTAAGCCAGTCATACCGAACAGTACGATTATAGCGCTCAATATAGGCGTTTTGCTGCGGACAACCTGGCTGTATGAATACAAGCTCAATATCGTGTTTTTTAGCCCATCTTGCCAGCTTATGGCTTACGTATTCAGGCCCGTTATCACAACGTATCTGCTTAGGCTTGCCTCGCCATTCAATCACTTGCTCCAGTGTCCGGATGACTCGAGCAGAGGGCAATGAAAAATCGGCTTCGATTGTCAGGCCTTCTCGGTTAAAGTCATCAATAATATTCAATAACCGATAACAGCGTCCATTATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //