Array 1 234794-235019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJII010000001.1 Thermomonospora cellulosilytica strain DSM 45823 Ga0415175_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 234794 30 100.0 35 .............................. GGCAGGTACGGCATGGCGATGACGTCCCGCTTGCT 234859 30 100.0 36 .............................. CACTCCTCCTCGGTCTCCAGCCGGGCCTGTTCCAGC 234925 30 100.0 35 .............................. ACGAGCTGGCGGCGTTCTTCGGTCAGGGGGTGGCG 234990 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 36 GTCCTCATCCGCCCTACGAGGGATCGCAAC # Left flank : CCGTTCGGCTGGTGGTGGCGGGTCCAGGATTCGAACCTGGGTAGGCGAAGCCGACGGATTTACAGTGCGCCATGGATGTTGAGGTTTCTCCCCCGCCGACCTGCACGGAATCCCGAGCGGCCTCCCCGTCGCCGCGAACGCATTCCGCGTATTTTCCGGATCATGGGACCGGCACCCTCTGCCCGGCGCCAACCGTCACGGATGCTCCTCGCTCCGGAGTGCTCGTTCGCGCGAACGGCGAGACGGTGCGACAGACAGAAGCGCGCGGACGAGTACTCCGGGTCGCCGGGGGTCTGGGGGACGGCGGAGTCCCCCAGGAACGCACTCGCCCAACCTGGCGACAAGGCGTCCGCCGGCGGGCTACCGTGACCGTGATGGACCGACCGCCAGTCGGGGATTGCAGCAAACCCCCCGGCTCGAACGCACAACCGGAGGTTCGCTGCAAACCAGGGCCGCAACCGATCGGCTTCAGCCTTTCTGGCCTGCGGCTTTACCCTGGG # Right flank : CTGGTGGACGACGCCGGTCCATCCACCCGGCGGGTGGCGGCCTCATCCGCCCTGTCAGAGGCTGTTGTTCCGTGCCGAGCGTTCTTGACCAGGCTGGCGTTGGTGGCGGCCCGCCGGTTCGCCGCCCGGTGACCGGCGCCCACGCCGCACGCGCCGGGCGGCGCGGCCGGCGGGCCGCAGCGGCGGCGCGCAGCGCCGCCGCCTTGAATCTCAAAAAGCTGAATTCGGCAACGGTGCGAGGGTCGCTAGCTGTTCATCTTCAGGAGGGCGCGCATGGTCTCGGCGGGGGTGACGCAGCGGAAGCCGGTGTCATCGTCAAGCATGTCGGCGGAGGCGTCGTTGAAGTTCGCAGGCGTGCAGCGTTTGAACGGGCTGGTGAAGGCACTGCCCTTGAGTTCGTAGCGGCCCGGCTCGGACTGGGTGGAGCACCACTCCCAGACATTGCCGCACATGTCGTAGACCCCATAGGGGCTTACGCCGCTGTGGTAGCGGTTGACGGG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCCGCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 6456747-6455560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJII010000001.1 Thermomonospora cellulosilytica strain DSM 45823 Ga0415175_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6456746 29 100.0 32 ............................. TACGGAAGGTGAATATGGCCAGGAGGGATAGA 6456685 29 100.0 32 ............................. CACCGGAACCCGGCAAACCGGCGACCGGTTCC 6456624 29 100.0 32 ............................. TGACCCGCCTCGCCGGATTCAAAGCCCACGAC 6456563 29 100.0 32 ............................. CCTGATGTGTCGTGCACGTTGTGCCTGCAGTT 6456502 29 100.0 32 ............................. GGATCATCGAGCCGGCCTGTGCCGCGCACGAG 6456441 29 100.0 32 ............................. GCCGACGTTGCGGTCTCTGCGCTGGCGCAGGG 6456380 29 100.0 32 ............................. GACTACCGCCAGTACGTGGTGCGACGGTCCGA 6456319 29 100.0 32 ............................. GTCCCCTGCCCGTCCACCACGCCCGAGCATGA 6456258 29 100.0 32 ............................. AGCCCGAGACGGTCACCTACGTCCTGGCCTCC 6456197 29 100.0 32 ............................. TCGTCCCCCAACACCCGCACGGACAGGGCGGT 6456136 29 100.0 32 ............................. GCCAAGGCTCCGAAGTGGGCCTTCTCCCCAAC 6456075 29 100.0 32 ............................. TCCACCGTTCCCATGACCGTCTGCCAGTCGGG 6456014 29 100.0 32 ............................. GCCCGCAAGGCCCGCGCCGGCAACAAGGACCT 6455953 29 100.0 32 ............................. GAGTCCCCGCTTCCCGAGCCCCGTCCGGCCGG 6455892 29 100.0 32 ............................. GACCGCTAGGTCTTTCTGCTTGAGCTCGACGA 6455831 29 100.0 32 ............................. CGTGACATACCGGTCTGGTGTGGTACCTGGGG 6455770 29 100.0 32 ............................. TGCCACCGCTTCGGCTCTTCCGAGCCGTCCGG 6455709 29 86.2 29 ............GG........C.....G GGCAGTGGCGCTGGCCGTTGTCGCCGGGG GCC [6455685] 6455648 29 86.2 29 ............GG.......CC...... ATGCCGACGGCGATGCCGGCCGAGCCGGG G,CA [6455619,6455623] 6455587 28 79.3 0 ............GG.......CC.A-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGCCCCTCTGCACGCATCCGAGAGGCCCTCTGGCGAGAGGTACGCCAGTACGCCGGCACCGGCCGCGCACTCCTCGCCTACACCACCAACAACGAACAGGGCTTCACCTTCGAGACCTGGGACCACAAGTGGCACCCCGTCGACCACGAAGGCGTCACCCTGATCCGCCGTCCCAAGGAGAGGCCGGCGGTCTCAGCAACCCCACCACCAAGCGGCTGGAGCAAGGCATCCAAACGCCGCCGCTACGGCAAACGCTGATCCGCTCTCTTCCGCCATGACCCGATCGGGAACGTTAGCCCCTACCCCCGCAACATCCAGCTGCGTTTCCTAGGCTGGCGTCGATGCAGAGCCGAGCTGCAAAACTACCGAACTGGAACAGGGAGCCGATGGAACACCCATCGGCTCCCTACACGCATGGATCTCAGATGTCCGATATGTCCAAGTTGCAAGAAGTGATGAATTCCGGCGTCAGTCCGAGATAAACCCGCAGGTCAGCAAGT # Right flank : ACACCCATGCGTGCGCGACCGCCTGCTGCGTCGGCTGCTCCCCGCGGGCGCGGGGCCGACATCTCGTGATCGCATCCCGGACACCGGTACGTCGGCTGCTCCCCGCGGGCGCGGGGCCGACACTTGCTGACCTGGGGTTTTAGAACGGGTGGGCGGCGTTTTCGTTCAGTCGGATTCCGGTCAGCACGAGAGTCACGGTAGCGCCGAGCGGGCAGCGTGGATGTCGGTTGGGTGCGCTGCGGTGGCCCAGCTGATAGACCCGCCGCCCGGTGGTGACCATCCAGCACCGCAGCATCGTGATCTGCCGGTTCTTGCCCAGAGCGCGGATCTCAGGGCGGTGCCTGTGCGGCGTCCGGTAGGCACGGAGGTGCGATAGCAGATGCAGATGGGTTTCGTCGGCGGCTCACACCACCGTGCTGGCTGGTGGCCGCTGTAGCCAGGCTGCAGCCGGCCACCACACTGGCACGGGCCGGATTCCCGCGGGTGATCGGTTTTGATCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6466328-6470208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJII010000001.1 Thermomonospora cellulosilytica strain DSM 45823 Ga0415175_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6466328 29 100.0 32 ............................. TCGAGCGCATCGTGCGCCCGCTGGGCAACCAG 6466389 29 100.0 32 ............................. TCGGGCAGGTCCCGCACCAACAGCCGGTCTTC 6466450 29 100.0 32 ............................. TGGGTCATGGTGAGGCCGCCGCTCTGGGTGGG 6466511 29 100.0 33 ............................. CAGCGATTCGACCTCGTAGGCGAGCCGACGGCG 6466573 29 100.0 32 ............................. TCGCCGATCGGCTCCTCCTCACCCACCTCGTT 6466634 29 100.0 32 ............................. CCGCTGGCGATGCTGCGGCTGCGGTGGGAGGT 6466695 29 96.6 32 ........................A.... AGCCCCCGAACCGGCTCCCCTGCCCCCTCCCC 6466756 29 100.0 32 ............................. GCCGCTGAATTAAGAAGCCCAGCCCCCTCCCT 6466817 29 100.0 32 ............................. CCACGGTGAAACACCCCTGCACGCAAGAGCTT 6466878 29 100.0 32 ............................. AGCCCGGGGTTCTCGCCGAACAGCGTGAGCGC 6466939 29 100.0 33 ............................. TACGAGCGGTCGCTGCCTGTGCTGCTCGCTACG 6467001 29 100.0 32 ............................. CACTCACACCCTGCAGGTCGGCACCCTCGACT 6467062 29 100.0 32 ............................. CGCACGGTGGTGTACCGACTCCGCGCCTACGT 6467123 29 100.0 32 ............................. TGGACGCCGCCGGGGCCGGCGCCGGTGAACCC 6467184 29 100.0 32 ............................. GACGCCGTCGAGTGGCTACACAACCACCCTGA 6467245 29 96.6 32 ............................G TGAGGCGTCCGTGCTCGTCCCACCACGCCTTG 6467306 29 100.0 32 ............................. CCGGCCGGCTTCTCCCACGGCCACTTGGCCGG 6467367 29 100.0 32 ............................. CGGGGCCGCCGTTCGCCTTGCGCGTCCGCGGC 6467428 29 100.0 33 ............................. TCCACCGTTCCCATGACCGTCTGCCAGTCGGGG 6467490 29 100.0 32 ............................. TGGACGCCGCCGGGGCCGGCGCCGGTGAACCC 6467551 29 100.0 32 ............................. AGGGTCGGCAGGATCCCCGCGTACACGGCTTG 6467612 29 100.0 32 ............................. GACGATGGTGATGATCAACGTCGAAGTCGTCA 6467673 29 100.0 32 ............................. CGGCCGTCCGTGGGGACCTTGGCCTTGTCGAG 6467734 29 100.0 32 ............................. ATACGGGAGGCGACGCTCGAGCAAGCGGCGTG 6467795 29 100.0 32 ............................. ACCTCCGGTGCCTCCCCGCCGACGTCGACCAG 6467856 29 100.0 32 ............................. CTCGGCGACATCACCGCCGTCGACTGGACGGC 6467917 29 100.0 32 ............................. TCGTCGAGCCCGCGGCCGGTGTATCCCTGCTC 6467978 29 100.0 32 ............................. CGAAAGGGGCGGAGGGAACGCCAAGTCCTCCC 6468039 29 100.0 33 ............................. CCCCCCGCCGCTGGCATCGTCCCCGCCATGGGG 6468101 29 100.0 32 ............................. GGACTGGTGTACGGGCTGTCGCCGGGCGCGGT 6468162 29 100.0 32 ............................. CTGGTCCGCGCCGCCCGACCGCCAAGATCTCC 6468223 29 100.0 32 ............................. CACGCCGCCGTCTGCCCGAACGGAGACCGGGC 6468284 29 100.0 32 ............................. GAATGCGGCACCTGTGATACCGCCGACATCCC 6468345 29 100.0 32 ............................. CCGGCGAACGAGGAGCCGGACGCCGTATACCA 6468406 29 100.0 32 ............................. GCGACCAACGCCATGTAGATGATCAGCAGTTC 6468467 29 100.0 32 ............................. GTCGGTATGGCGGCGTCGCCGTGCTCGACGGC 6468528 29 100.0 32 ............................. GGCCTGTTCCGCGGCGTCTCGCAGGCGATCGA 6468589 29 100.0 32 ............................. ACGGCGGCCAGCGCGCCGGTGAAGGTCATCAG 6468650 29 100.0 32 ............................. TCCTGCAAGCCGTGGACGTCCCCCCGGCCGCG 6468711 29 100.0 32 ............................. GTCAGAGCCGCCGTTGCGGCAGCTCAGCAGCA 6468772 29 100.0 32 ............................. CCGCTACCGCTGCTGACGGCGTGGATGTGAAG 6468833 29 96.6 32 ............................T GGTCCCTGACGGAAGACTGATCTCCTCACATA 6468894 29 96.6 33 ............................A CGTCGGGCTGGTGTACGTGCAATGGGGCCATCT 6468956 29 100.0 32 ............................. TCGGCGGCGGCCTCCAGCGACGGGAACACCGG 6469017 29 96.6 32 ............................T CGGGAGGGACGTCATGGCAGAGCTGGAGCCCT 6469078 29 100.0 32 ............................. CTCGGCCAGCGCCTCCACGTCCTCCTCGTCGA 6469139 29 100.0 32 ............................. CCTTCTCCTCAGCACGAAGTGGCCCGGATCCT 6469200 29 100.0 32 ............................. GGGTTCGGGGAACAGGAAACCGGGCCGTGACC 6469261 29 100.0 32 ............................. CCTCTCCGTTCAGCGGTTGGACTTTTCCGGGG 6469322 29 100.0 32 ............................. GCTCGCTTCTTGCGCGACAGGTTCTCGCCCTC 6469383 29 100.0 32 ............................. CAAACACCCGAGGCGGTCATCCCGCCCAAGGC 6469444 29 96.6 32 .....T....................... ATCCAATGTCGCAGATGAACACCCAGGTCACC 6469505 29 100.0 32 ............................. TTCTTGGCCTGGCTGGGCTCGGCGTTCGCCTT 6469566 29 100.0 32 ............................. ACCCTCCGTATCCGGGCGCCGGTCATGCCGAT 6469627 29 100.0 32 ............................. TCGCCCCACGCCCTCTTGAGCTCATCCCAGGG 6469688 29 100.0 32 ............................. CCATGTCAAGGGACTTCATAGTCAGAGAGTTG 6469749 29 100.0 33 ............................. TGGACGGTCATCAACCGTCCCAAGTTCGGAGAG 6469811 29 96.6 32 ..................A.......... CCACCGGGGCAGGCCGGTCAGGCGGATCCGGG 6469872 29 100.0 32 ............................. GCGTCGTCATGGACGGTCTTGTCGGCGCGTTC 6469933 29 100.0 33 ............................. ACCTTGGCCTCGGGCGCCACCCCGAGAAAACCG 6469995 29 100.0 32 ............................. GTCGGGGTGGCCAGGCCGGTGCCGTTCACCTT 6470056 29 100.0 33 ............................. GGCTGTCCCCGCCGGGCCTGCGGTACCGCAGCC 6470118 29 100.0 32 ............................. GCGCGCACCAGCCCGGGCCGGTGGGCGCGGAA 6470179 29 93.1 0 .........................C.T. | G [6470196] ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.5 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GTGGTAGCCAGCCACACCACCAGCCGACGCGCGTCCTCTGCCCTTCCCGGCATCTCCGCCGCGACCAACCGCTGCACCTGCCAGGGAACCCACTCGTCCCACAGCAGCCCCGCGACGGCGCCACTGTCGGCCATGTGCCGCCACAACGGCAGCCATCCACCAGTCGCGTGATCATGCTTGGCCCACACCGCCCGGGCAGCGGCCGACAAGCCATCCCCCAGCCGAACCGACCCATCCCCGTCAGGCATGTGCACAGTCAAGCAGGAGACACAGGACTATGCAGAGTTTTTCCAGATTTCGTCTGACACTTCTCTTCACAGAAGATCTTGGATCCCAGCCCGACCGCCGGCCCCACGGCCCAACCCAGCTTGCCCGCGCCACCAGGTCCAGGCACGCTGTATCAGCAATCAAGCCTGGAACGAAGCGTGTCCCAAATATCCGAATCTGCAAAAGTAAGGAATTTCGCCCCCGCCCCGCCATAAACCCGCAGGTCAGCAAGT # Right flank : CTGGCAGCAGGGGTTCGGGCTCTTGCGTGTCGGTTGTCTCGTTCGCTTTCAGAGGTCACCCGTTCTGATGCAACGGACGCGGTGCAAGGGTGAGGTGATGCTGGCTGCAGGGTCGCCATCAGCGTCAGGAGACACCGAGTCGGTAGCGATACATGGTTACTGTGACACTTGGCCGCAGGTGACGCAGGAGGCTGGCTGCACATGTCGGAGGAGATCGCCGCTCATTACGATCGGCTCGCGGATCGCTACGACGAGAACTGGGCGCACAGCGCGGAGTTCATCGCTTGGATGACGGGCTGCATCCTGGAGCGGCTTGAGCCGGCGCCCGGAGACCGGGTGGCCGACATCGGGTGTGGGACTGGGCTTTTCACTCAGGGGCTTGTGGAACGAGCCGGCCAGGTGGCCTGTGTGGATCCGTCGGGAGCGATGTTGGAGCGGCTTCCGGCGGGGAAGGGTTTCGTTCCGGTTGAGGCGTCCGCCGAAGATGTGGTCGAGGGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 6475521-6477806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJII010000001.1 Thermomonospora cellulosilytica strain DSM 45823 Ga0415175_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6475521 29 96.6 32 ............................G GGTGGCCGATCGCCGTCCCGGACGCCCATCCC 6475582 29 100.0 32 ............................. CCGGCGAACAAGGAGCCGGACGCCGTATACCA 6475643 29 100.0 32 ............................. CGGCAGATCGCCCTCGTCGATGACCAGCTCGA 6475704 29 100.0 32 ............................. GACGGCCGCGAGCTCAAGGAGTACTGGACGCA 6475765 29 100.0 32 ............................. GACGATGCCGGCGGCGAGGCATGCGACGGAGG 6475826 29 100.0 32 ............................. AGGCAGAAGCCGGTCTACGACGTGCGCGCCAC 6475887 29 100.0 32 ............................. CTGGCGGTCATCTACGACGCCAACGGCAACGT 6475948 29 100.0 32 ............................. AAGCCGCGCCGCATGAAGTCCGCCGAGGTCCG 6476009 29 100.0 32 ............................. TCGGGGATGACGGTCTGCATCAGAACGGGGCC 6476070 29 100.0 32 ............................. TGCACCGCCCACGGCGGCCGTCCCGGCTCGGC 6476131 29 100.0 32 ............................. TCGGCGACCTCGGCGGGGGTGGCCAGCGGGCG 6476192 29 100.0 32 ............................. CGTGCCGAGGGCCGGTTGGAGCCGGTCCTGCG 6476253 29 100.0 32 ............................. GAGGGCCACGCGAAGTCCTGCCGGAACTGCCA 6476314 29 100.0 32 ............................. GTAAAGAGCCTAGACGAATCGTTATGAAGTAA 6476375 29 100.0 32 ............................. AGCTCGGCAGGACGCTCGCTCACCGCACCCCC 6476436 29 100.0 32 ............................. ACCCCGGGGACGGCCGACCCCCAGGAGCCGAC 6476497 29 100.0 32 ............................. TGGCTGCTGCATTCGGGCAGCGAACCCGAGCT 6476558 29 100.0 32 ............................. GACGCAGGACAACCCCGGCGGAAACCTCGGCA 6476619 29 100.0 32 ............................. GCTGCAGGCGCGTCCCGGACGGCACTGAGCGC 6476680 29 100.0 32 ............................. TGCACACATCCCAATAGAGGGGGTCAGGAGCA 6476741 29 100.0 32 ............................. ACCACCCGGATCATGGACTCGCTGGTGAAGCG 6476802 29 100.0 32 ............................. TGCTAGACAAGGCCGGAGAGCAAAGCGCCGCC 6476863 29 100.0 32 ............................. GAGGACGGCTCCCCGTACGTCGAGCCCACCCA 6476924 29 100.0 32 ............................. TGGACCGCGCCGTCCGGGATGTCCGACGCCTC 6476985 29 100.0 32 ............................. GAGGACGGCTCCCCGTACGTCGAGCCCACCCA 6477046 29 100.0 32 ............................. TGGACCGCGCCGTCCGGGATGTCCGACGCCTC 6477107 29 100.0 32 ............................. GACGTCGCGCAACGCGGCGGCCAGGGGGATGT 6477168 29 100.0 32 ............................. TGGAACGGCTCGTGGCAGTTCCGGCCGCACGC 6477229 29 100.0 32 ............................. GCCGACAGCGGCAACCGCTGGCGCAGGGCGAC 6477290 29 100.0 32 ............................. CATTCCTCGTTGGTGGTGGGACGGCTGTTGCC 6477351 29 100.0 32 ............................. AGCCCCAGGCGGACGCCGCGCTGGAAGCGGCA 6477412 29 100.0 32 ............................. TTGTCGGAGTCGAGGGTGTGCTGCACGATCTG 6477473 29 100.0 32 ............................. CCCGGTACTCAGACCAGACGTGCAACGTCTGT 6477534 29 100.0 32 ............................. GACTCCCGGGTGTACGGAATCACCAGCTCTCG 6477595 29 96.6 32 ...........A................. CTCCCCAGGGGTGCGCGCGGCCCGCAGCGCGT 6477656 29 100.0 32 ............................. CTCTCACTGCCCGGATGGGCGAGAATCCGATC 6477717 29 100.0 32 ............................. GGCACTAGTCGTCACCACCTTCCGGACAGTCC 6477778 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.8 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCAACATCAACGGCGCCGTACTGATCTTCACCCTGGTGACCGTGCCGGCGGGCATCGCGCTGGCACTGCTCCAAGTCCTCAGCGCCAAAGACCTCTGGATCTTCACCACCGTCTTCGCCACCTGCCTGCTCCTCACCGGCCTCCTCCTGGCGACCGGCCCGGCCCGATCCGTCCTCCGCTCGATGCGAAGTCCTCACAAGCGAGCCATCGACACATCAACCCGCCGCCGGAGGCTCAACGCGCCGCGGGATCATGCTTGAGAGCAGACACGTACCGACTCAAGAGCTGCAGACCGGGCCGCCGGTCCACCACGCCGACGCACTGCTGATCCATACTGCGACTCCAGCAGCACCCGCCACATCGAGTTGTCCCGACCACCATGCCGCAGGCACTCTGAACCAACAACGAAGCCACCCAACGAAGCAATGACCGAAATGCCCGAATCTGTAAAAGTAAGGAATTTCGCCCCCGCCCCGCCATAAACCCGCAGGTCAGCAAGT # Right flank : CTCCTCGAACGTGAGCCTGTGTCAACACGCGCGAATCCTGACTCAGGCACAGATTCCGTGAAGGCGCCGGTCGGGTAGGTCACGGTTCGGTGTTCTCGTCGGTAGCCGACGTCTTGATCACCGGCATCGCCGGTGTGTCGATCAAGGAGTTGGTGGCCGTCTTGTTTCCTCACCTGGCCCGCGTGTGCGTGGACCAGGTGTTCCGTTCCGGAGCCTCGGTGCGCATCCGGGCCAGAACCGCGACGAGCGAGGCCAAGTGCCCAGGCTGTGGGGCGCTGTCGCAGCGCAGACACAGCCACTATGAGCGGCGCCTGTCCGACACCGCGGTCGGTAACCAGGAAGTACTGATCCACCTGCGGGTTCACCGGTTCTGGTGTCCCAACGACGCCTGCGACAAGAAGACCTTCGCCGAGCAGGTTCCGGGCCTGACGGTCCGCTACGGCCGCCGCAGCATCACCGCAGGCGAAGCCTTGGGGGACATCGTGCTGGCATTGGTCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 6532114-6531550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJII010000001.1 Thermomonospora cellulosilytica strain DSM 45823 Ga0415175_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 6532113 37 100.0 34 ..................................... GCGTCCAGGCCTCGATCCTGGGGTTCTTCGGTTC 6532042 37 100.0 38 ..................................... GCGGCACCCGATTGTCGACCTTGCGTGGGGTCAAACGA 6531967 37 100.0 39 ..................................... CCACTTGCCGTTCACACGGCGTTTGATCACCGTAAAAAG 6531891 37 100.0 38 ..................................... CAACGAATCCCACGCCTGACCGATCTCGGCTACAACCC 6531816 37 100.0 38 ..................................... ACAGGGGCATGGCCTGGGATCTGTCTTGGGCTCCACGA 6531741 37 100.0 37 ..................................... TCACCTTGCCACCACGGCAGCTTTGACAGTCCGTACC 6531667 37 97.3 46 ...............................G..... GTCACCGCTTTATCGGGTTCTTCCTGTGAACCAGCAGGAAGAAAGT 6531584 35 83.8 0 ...A....--..T...T..............G..... | ========== ====== ====== ====== ===================================== ============================================== ================== 8 37 97.6 39 GTCGCAAGGCACCGCCCGACACCGAGGGCATAGAAAC # Left flank : GCTGGAACGAGCACCTCCCCGACGACTCCCCCCTGCGCATCGACGACGACCTGGCCCGCACCCTGCACCGCACCGTCGAACTGGTCTCCTACGAGCTGTCCACCACCCGCCACGACGGCGGCCACGGCCACCTGGTCACCGGCTTCACCGGCCGCATGACCCTCGCCCCCGCCCCCGGCACCCCACCTGACCACCAGACCACCCTCACCGCCCTGCTCCGCTTCGCCCCCTACAGCGGCACCGGAGCCCGCACCACCCACGGCTTCGGCGCCACCGCCCTCCACGAACCCCCCACCCGCCCATGACCCGCCCTGCACCCGGTACAGCCCCCACCGCGCAGGCCCGAAGTCGCCGAGGATGGCGCACCGGCATATCCGCAGGCCAGCCACCATGCGCTCGCGTCAGGGGACAGGGCGGGGCTATGCTCGAACCCGCCCCAGACCGAGGATGGCGGAACGGACACCGAATCCGCAGGTCAGTGCCCCTGAAAACGCCGACCC # Right flank : TTGAAGGCCCAACCGGTCCGGTTCATGTCCCGCTGGTCGTGGTGGGGCGTCTGGGGTGATGGTCGATGGGGGAGTTGCTGGCTCGGGCGTTCACCGAGCAGGCATTGCTGGACGCCTGGGACGAGGTGCGGGAGTCGGCGTTGGCCGATGGGGTGGCCGGGCCGGAGGTGGAGCGGTTCGAGGCGTCCGCGGCGCAGAGGATCAGTGAGCCGGCCGAGCAGCTGGCCGATGGGGCGTTCGAGCCCGGTCCGGTGTTCCGGGTGGAGATCTCCAAACCGAGCGGCGGGGTACGGCGGCTCGGGATTCCCTCCCTGGTGGACCGGATCGTGGAGCGGGCGCTGCTGGAGGAGCTGGATGCGATCATCGATCCGCTGCTGTTGCCGTGGAGCTTCGCCTACCGGCGCGGGATGGGTGTGCGGGATGCGATCGCCTGCCTGGTGGAGGCCCGGGAGGCCGGGGCGCGCTGGGTGGCCCGGGCCGACATCAAGGACTGTTTCGAC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAGGCACCGCCCGACACCGAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 6 6543174-6542765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJII010000001.1 Thermomonospora cellulosilytica strain DSM 45823 Ga0415175_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6543173 37 100.0 37 ..................................... GACGTAGTTTCTTGATGCCGCCGCCCATGCCATTGCT 6543099 37 100.0 37 ..................................... CGGTACACCTTCGTGTCCATCCGATGGAACCCCAGGC 6543025 37 100.0 38 ..................................... AGCGTGTGAAGTGCGTCTTCGCTGCAGCTCTCCTCGAT 6542950 37 94.6 37 .......................A...A......... TGACGGGCGAACTGCCCCAGCAGTGCGTCGTAGGTCT 6542876 37 86.5 38 T.......A.G........T...........G..... GGCTTATTACTGCCCGGGGGGCACGTCTGTGGCGTGCT 6542801 36 89.2 0 .......................A.......-..CG. | G [6542770] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 95.1 38 GTCGCAACGCACCGCCCGACACCGAGGGCATAGAAAC # Left flank : GCGCCCGCTGCGTGCCCGACCCGTCGTCGTGCCCGTCCGGCTGCCCCCGGCTCTTGCTCGGTTCCATCCGGGCGAGCCTGTCGAGGGGCGCTGGCACCGCCCGGAGCGTGCAACGTGGGCGCCGGCCGGCCGGCCGGACGGCGCGCGCCCGGCCGCGCATCGACGCAACACCCGCCCAGCACCCCAGCCAACGGCGATCCCAGGGTCGCCCCGCCGCCCCGCCGCGAGCAGACACGAAGGGCCGCACAGCCCGACCACCTCCTCGGCCCCCGACCCGCAGCCCTCACGACGGACACCCCGGCACCGAGGCCGCAAGGCCGGTACAGCGACCTGACCCTCAGGCCGACATCGGGCCGGATGGCGCAACGAGAAAACCCCAGGTCAGACTGCAAGTGGTGGCACCCGGAGCCCACTGGGCGTTACGCTCGGGGCGGCACCGGGGCGAGGATGGCGGAACGGACACCGAAACCCCAGGTCAACAGCACCGCCAACGAGCACCC # Right flank : GTTGCGTCGTCGCACCGGCCGGCGCTCAGCCACCGGCTCACATGGGCCGAGGTCTTTCTTGCCTCCGGCTCCGGGAAGCCCAGGGGCCTGTGTGGACGCCGCCGGATCAGGTGGCATGCGCTTCCCGAATGACGAGAACGAGCAGGGGACGCGCTCGAGTCATGTTCCAGCCGTGTCGGCAATGGGAAATTGAGTGGCACGGTGATCGTTGCGGACATGCTGGAATCTGATTCCTGTGAGGATTGATTTTCTGGTGACAGAGACGGCGCTTTCGGGGTTATAAATCGTTTCTATTATCGGACTGCATGTTATTGGTGTTTTGGTCATGGGCTGCGGGCGATCCCGATGCGGATGTTCCGGGAAGTGATGGCGAAGGCGTCTTTTGGGGGGTTAGCCTGCCGGAGCGGGTGAAACGGGGGCTTGATCACCGCGGCCATGGGCGTCTTGCCGGTTTGGCGCGGCATGGAGCATGAGCCGGTCGTACGGGGGTGAGGGGTGAC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGCACCGCCCGACACCGAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //