Array 1 14774-15221 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYS01000004.1 Pseudomonas aeruginosa strain AUS476 IPC277_4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14774 28 100.0 32 ............................ AGTTGCCACCACCACACGCGGTGGAGCAGCTG 14834 28 100.0 32 ............................ TCATTGCAGTAGCGTAAATATATCTGGAGGAC 14894 28 100.0 32 ............................ ACGGTCTGCCCGCTGGAACTGTTGAACCAGAG 14954 28 100.0 32 ............................ AGGACGGGTCGCCTTGGAATCCGGGCGCTCAG 15014 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 15074 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 15134 28 100.0 32 ............................ TGATCGCGGTAGCGTGGTCCGATCACCTGGGC 15194 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCTCTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATAACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 64107-63163 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYS01000013.1 Pseudomonas aeruginosa strain AUS476 IPC277_13.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64106 29 100.0 32 ............................. CGTCCACAACTGATGCAGGGGCGGTCCCAGTC 64045 29 100.0 32 ............................. AGAAAGCGCCCCGGGTGGGGCGCTGTATCGAG 63984 29 100.0 32 ............................. TACCACCACAGCCGGCCGAACTTCCCAGGCCC 63923 29 100.0 32 ............................. CAGATATATAGAGATTCCTGAGGACACAAGGA 63862 29 96.6 32 ................G............ GTATTGACGTGATGCTCAAATATAAGAAATGA 63801 29 100.0 32 ............................. GGGCGGTACATTGACGTCATGATGAAATCCCG 63740 29 100.0 32 ............................. CACCTCGTCCATACCAACATCCCTATCTACTC 63679 29 100.0 32 ............................. CAAACTGCCCATGTGTGGCGGGGTCGGGTGAA 63618 29 100.0 32 ............................. CACGGCTTCTCCATCAGCTTCCGCATGCCGCG 63557 29 100.0 32 ............................. ATCGGCGCGCTGATGCAGCAGATAGTCGACTT 63496 29 100.0 32 ............................. TAGTAGCGGAACCCGACCGTCTGTGCCTTCGG 63435 29 100.0 32 ............................. ATCGCGGAGAGAAGGGCCTGGTCGAGACGGTA 63374 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 63313 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 63252 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 63191 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCTAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74164-73280 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSYS01000013.1 Pseudomonas aeruginosa strain AUS476 IPC277_13.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74163 29 100.0 32 ............................. CGCTGACGACGGTCGCCGAGTGTGACCGCATC 74102 29 100.0 32 ............................. TCCTGGCACGGCGTGCCGCCCACCAGGATCAG 74041 29 100.0 32 ............................. CATGCCCGCCAGATCGGGGAGGGGTTGCTGCC 73980 29 100.0 32 ............................. TTACGCCTGCCGGTGAGTTCTGGCCCATGGAT 73919 29 100.0 32 ............................. CCGGTTCTGCAGGTTCTCGAACTGGTCGCCGG 73858 29 100.0 32 ............................. CTGTAGGTGGTGACATCGTCGTACGGCGCGGA 73797 29 100.0 32 ............................. GGGAAATGGGCTTGAAGGGCGAAGGGAATGGT 73736 29 100.0 32 ............................. GCAGTGACCGCCGCCGGCCTGGACCTGGTCCG 73675 29 96.6 32 ..........T.................. TCGGGTATAGGTGATACCCGACTTTTGTCTCA 73614 29 96.6 32 ..........................T.. CCCCCAGTTTGGGGGCTTTCTTTTTGGCAAAA 73553 29 100.0 33 ............................. TCCGCCGACATCGACCACCCCAACGATGCTGCG 73491 29 100.0 32 ............................. CCGAGATGTGGCGCCGAAACGAGCGCGAGCGC 73430 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 73369 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 73308 28 79.3 0 A..........A..C.....-..A....T | C [73299] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //