Array 1 21494-20919 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVS01000040.1 Streptomyces galilaeus strain JCM 4757 sequence040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21493 29 100.0 32 ............................. TACGGCACCGTGAACCCGTTCGCAGCCTTGCT 21432 28 89.7 32 .......C.........-...T....... GCGTCCATCCGCGCGGAGGCCTCCGTACGCCA 21372 29 93.1 32 .......C...............T..... AGCACGGCGGTCGGGTCGGATGCGGTGGCGAT 21311 29 89.7 32 .......CA........A........... CGCCGTGAGGCGCTCAACCTCAGTAGCATGGC 21250 29 86.2 32 .C.....C.....G.....T......... TCACGAGGAAGGCCGCGGCGTGACCGCTGAAG 21189 29 93.1 32 .......C......T.............. GAGCTGCACGATCTCGAGGAGGCCGCTTTCGC 21128 29 89.7 32 .......C...A.G............... GCGCGGGCCCTCGCATGGCTCGCCAAGGCAAG 21067 29 89.7 32 .......C........G........C... TCGCCGTCCTCGACCAGCTCGCCGCAGACCTC 21006 29 79.3 29 A......C.A.A.G...........C... CGCAAGAGAACCCCCGCCGCCAGTCCTTC T [20981] 20947 29 79.3 0 .......C...ATG...A........T.. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 89.0 32 CTGCTCCTCGCGCCCGCGGGGATGGTCCC # Left flank : CTTCGGCTCCTGATCTGTCGGGGCAGCCGACCAAGGAGACCGAGGCTACGCCACCCGCTGTAACCGCAACCGTCACGGAGTTGGAGACCGTCACGGAGGAGCCAACGACGTATGCGCCCGCGAGCACTGCCAGTACCGACGTGTACTACGAGAACTGCGACGAGGCGCGGGCCGCAGGCGCTGCGCCTGTGTATGCCGGAGACCCTGGATATGGGCCGCACCTGGACCGTGATGGCGACGGCGTCGCATGCGAACCTTACGTGGGGCACTGATGGCGATTGAGGCACGCAATCGACGCCGGCCATCCATGCACGCACGCCTTACGTCCTCGCGGACGAGAGCGGAGACTGCGCCGCCTGCGCGAGATCGGGCAAGGTTGGGCCGTCCGGCAGCACCGCGCTCTGACGACTGCCACTCGGGGCGTTCTGAGTGGTATGCCGGGGACAGTGAAAGTGCTGAGGAACGAGCCTCGCCTGGGAGAAACTTGCAGGTGACGCAGT # Right flank : GGACCTCGGTGGCGCCACTTCCGGTCGTCGCCGGCGCGGGCTCGTGCGCTGTGGGGCCGCCCGGCTGTCGGCGACGCTTGAAATGTGAGCCGATTCCGGCGGGTGAAAAATGACCCCCCGCTGCGTCAGTTGATGTTGGTCATTCCCCGGTGGTGGCGGCGGGAACCCGTCCGAGGTCGCGGCCGCGCATGCGATAGCTGTCGCCCTTCAGCGAGATCACCTCAGCGTGGTGGACGAGGCGGTCGATCATCGCGGCGGCGACGGTGTCGTCGCCGAAGACCTCGCCCCAGCGCCCGAAGGGCTTGTTGCTGGTCACGATCACCGAGGCGCGTTCGTAGCGGCCCGAGATGAACTGGAAGAACAGGTTCGCGGCCTCGGGCTCGAAGGGGATGTAACCCACTTCGTCGACCACGATCAGCGGGATCCGTCCCAGCCGGCTCAACTCATCGCTCAGCCGCCCTGCTTGATGGGCCTCAGCAAGGCGGGTGACCCACTGGGCG # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCTCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23769-22339 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVS01000040.1 Streptomyces galilaeus strain JCM 4757 sequence040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================ ================== 23768 27 85.7 34 ...........G.CC..........-.. CACATCCAGACCGAGGTCCGCCACTACCGCGGCA 23707 28 85.7 33 ...........G.CC..........C.. CGGCGGCGCCGCAGTCGGCGGACGGCTGGCCAT 23646 28 85.7 33 ........G..G.CC............. CCGCTTAGCTCCGGGGGTCGTGATGCCGAGCCC 23585 28 82.1 156 ...........G.CC...........GG TCGCCGGCCACGCCGACGATCGCCGCACGGACTGCTCCTCCACGCACGGAAGGTCCCGGCGCCACCCGCTGGATGGGGCATTTGAGTGGTATGCCTGAGTCGGTGAAAGTGCTGAAAAACGAGGCCAGCTCGGGAGAAACTCGCAGGTGAGGAAGT 23401 28 100.0 33 ............................ CGGCGGGGTCCCCTTCCCCTTGAGACCGTAGCG 23340 28 100.0 33 ............................ CCTCCTCACGCGGCTGAGCCTGCGGGTCGCGGG 23279 28 100.0 33 ............................ CTCGTTGTCGCCGAGCCGGTCCGGGACTTCGAT 23218 28 100.0 33 ............................ CAGGGCCAGGGCCATGAAGGCGCCGACCGCGAT 23157 28 100.0 33 ............................ CGGGTTCGTGGGCGCCCCGAAGGGTCCGATGTG 23096 28 100.0 33 ............................ CGCCCCCACCGAGCTGGCCGACCAGGTCGCCGA 23035 28 100.0 33 ............................ CGGAACCCCATGACCGACCAGACCGCCGAGCCC 22974 28 96.4 33 ................T........... CGAGCGCGGTCCCAGGATGGCATAGCCGGTCAG 22913 28 100.0 33 ............................ CTGCCGCGCCCGCCGCCCCGACTGGGCCCACGC 22852 28 100.0 33 ............................ CGAGACGGCGCCGCACCCGCTGGCCGACCCGCT 22791 28 96.4 33 ...................A........ CTGGACGGTGAGCTGGGTGCCGATCGGCGGCTC 22730 28 96.4 33 ..............C............. TTCGTGGGGGACCATCGCGGGCGACGGGTACCG 22669 28 89.3 33 ...........G.CC............. CCCCAAGCGGCACGAACTCGAGCTCATGATCGC 22608 28 85.7 33 ...........G.ACT............ CCGCAACGCCAAGGGCGCCTGAGGCCCCGTTAG 22547 28 78.6 33 T.......T..C.CC.....A....... TTACGGCGACGCGCTGCAGGGCGACGACCCGGC 22486 26 92.9 33 ..............--............ CGCCGCGACCACCAGACCATCGACGTGGTCCCC 22427 28 85.7 33 .....G.....C..C..........C.. CATGGCCCATGGCGTGGCCGGGCTGGAGGGCTG 22366 28 92.9 0 ........T.....C............. | ========== ====== ====== ====== ============================ ============================================================================================================================================================ ================== 22 28 93.3 39 CTGCTCCCCGCACGAGCGGGGATGGTCC # Left flank : CTGCTCCCCGCACGCGCGGGGATGGCCCCGTGGTGCGCGCCCACAGCGAAGTCGGTATCAACTGCTCCCCGCACGCGCGGGGATGGCCCCCAGGTCGAGCCGATCAGGTCGCGCGGGGTGAACTGTTCCCCGCGCCCGCGGGGATGGTCCCCTCAAGTCCCCGTACACGATCGGCATCACGAACTGCTCCCCGCACGTGTGGGGATGGCCCTTCGACGACCTGATGACTGGTTCGTTGCCGCCTGGCGGGCCCCGACGGGGGTGGGCTGGGTGAGGACTCCTGTTGTCTTGGCTTTGCCTACTCCCCTGCGTGCGGCAGCGCTGCTCCCACCCTCCGGCAGATGGTCCCATTGTGCGGACACCGTGTCTCCACCTGTGCGGCCCCGTCGTGTCGCCGCGAGCGAAGCCTGCGAGTTGGGGCGTTTATGAGTGCTATGCCGGAGTCGGTGAAAGTGCTGAGAATCGAGCTCCGCTCGGGAGAAACTCGCAGGTGACGCAGT # Right flank : CCAGGTGTCGGGGGACGCGGTCGTCCACCCTGCGACTGCTGCTCCCGCGGCGTGATGATCTTCGGCTCTCGAGCGGCCGAGATGCGCGCTGTTGGGGCGGGTGGTGCACTCGGGGAGCGGGGTAGTCGGCTGGAGGCGCGATGGCTGGCAGCGGAAGACGCGGTGGTTGGGTGTGGCGTGCGCGACGATGGTGGGCGCGCAGGGGGTTGTTCGGCCGAGTAGTGGCCATTGCGCTGGGGTTGCTGGTCGCGTTCATCGTGCTCGGCGGGCTGCTCGAAGCGTGTGGAGTCGCCGAGGATGAGCCCCAGGAGCCTGCGCCGACCAGTAGCGCGGGAACCTCCACTCCTTCGGCTCCTGATCTGTCGGGGCAGCCGACCAAGGAGACCGAGGCTACGCCACCCGCTGTAACCGCAACCGTCACGGAGTTGGAGACCGTCACGGAGGAGCCAACGACGTATGCGCCCGCGAGCACTGCCAGTACCGACGTGTACTACGAGAAC # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.53, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [23-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25393-24057 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVS01000040.1 Streptomyces galilaeus strain JCM 4757 sequence040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================== ================== 25392 29 100.0 31 ............................. TGGCCGCGTACTCCATGATGATGCGTTCATC T [25367] 25331 29 96.6 32 .........................T... GCGCCGCACTCCTGAAGCCCGGCCGGGGAGAC 25270 29 96.6 32 .........................T... TGTCCACACCGGGCGGCGGTGTACAGGTCGCC 25209 29 100.0 31 ............................. TCGCGGTGTTGTCGGCGATCTCAGGGTGGGT T [25184] 25148 29 96.6 32 .........................T... AGCCCGGCCGCCCAGGACAAAGTGGCCACCGT 25087 29 96.6 32 .........................T... TGGCGCAGCCAGGTCGTCCTCAGGATCAACGC 25026 29 96.6 32 .........................T... TAGTGGCCATGCGGGACGATGTCCGGTCGTCC 24965 29 96.6 32 .........................T... GTAGTTGGCCGGCGGGTACGCCGTGGCTGACT 24904 29 100.0 31 ............................. CATCTGGTGATCAGCGCCGCCGTGCACGTCC T [24879] 24843 29 100.0 32 ............................. AGGGGAGACATGGCGTTGCGTCGGGAGTACTT 24782 29 82.8 32 ...........G.C...........TTT. AGCGCCGGGCCGCGAATCGTGGGAACGAAATT 24721 29 89.7 31 ..........TG.T............... CGGACGGCGAGATCCGCCACGGCCACGCGAT T [24696] 24660 29 79.3 117 ...........G..GC.A...C..C.... GTTGCCCGCATCATCTCCACCAGCGCCCGCTCAGTGGGGTATTTGAGTAATATGCCGGAGTCGGTGAAAGTGCTGAGAATCGAGCTCCGCTCGGGAGAAACTCGCAGGTGACGAAGT T,T [24634,24640] 24512 29 100.0 32 ............................. GGTGCCTTGCCACGTACAGTCCGCAACCGAGC 24451 29 100.0 32 ............................. GCGGTCGTCCTGACCCTCACCGTCGGCATAAT 24390 29 100.0 32 ............................. GGCATCGCCCCGCGCGGCGTGATGCGGTTCGC 24329 29 100.0 32 ............................. GATCGGAGCGCAGCATGACCGCCCGCCGCATC 24268 29 100.0 32 ............................. GTGGTGCGCGCCCACAGCGAAGTCGGTATCAA 24207 29 100.0 32 ............................. CAGGTCGAGCCGATCAGGTCGCGCGGGGTGAA 24146 29 89.7 31 ...T.......G.C............... TCAAGTCCCCGTACACGATCGGCATCACGAA T [24121] 24085 29 89.7 0 ..............T.T...........T | ========== ====== ====== ====== ============================= ===================================================================================================================== ================== 21 29 95.8 36 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : CTCGGGTATCGCTGCTGTTCAACTGCCGTACACAAGGACTTAGCGAGCGCGCCGATGACCACACCGTGCTCGTTCATGTGCTCCGCAGGAACCTCGATGGGTCCGAGGAACGGCACGCCTCTTGGCTGGCAGAGCAGATCGGTCAGTCCGTCATCGGCCCTCCACTGGGGTGAGCCCGATCGGACCAAGGGTGCAGGCGTGACGCTCCGAACCGTACGGACGTGACAGTCGGCTTACCAATTCCACTGGTTGTGATCGGCCGACGGAAATGGAAACGCCCGCTGTAGTACTCCCCGTGCCGGTGGAGAAGAGTCCCTTCGCCGCCGGCACGGTTGCTGCAAAACACCCCGTGGCCGCTTGCGCGGGATTGAACCGTGGGGCCGCCCGGCAGTATCGCCGCCCTGACTCCTGCCAGTTAGGGCGTTTTGAGTGGTATGCCGGAGTCGGTGAAAGTGCTGAGAAATGGGCCTCGCTCGGGAGAAACTTGCAGGTGACGCAGT # Right flank : TCGACGACCTGATGACTGGTTCGTTGCCGCCTGGCGGGCCCCGACGGGGGTGGGCTGGGTGAGGACTCCTGTTGTCTTGGCTTTGCCTACTCCCCTGCGTGCGGCAGCGCTGCTCCCACCCTCCGGCAGATGGTCCCATTGTGCGGACACCGTGTCTCCACCTGTGCGGCCCCGTCGTGTCGCCGCGAGCGAAGCCTGCGAGTTGGGGCGTTTATGAGTGCTATGCCGGAGTCGGTGAAAGTGCTGAGAATCGAGCTCCGCTCGGGAGAAACTCGCAGGTGACGCAGTCTGCTCCCCGCGCCCGCGGGGATGGCCCACATCCAGACCGAGGTCCGCCACTACCGCGGCACTGCTCCCCGCGCCCGCGGGGATGGCCCCGGCGGCGCCGCAGTCGGCGGACGGCTGGCCATCTGCTCCCGGCGCCCGCGGGGATGGTCCCCGCTTAGCTCCGGGGGTCGTGATGCCGAGCCCCTGCTCCCCGCGCCCGCGGGGATGGTGGT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 30873-30160 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVS01000040.1 Streptomyces galilaeus strain JCM 4757 sequence040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================= ================== 30872 29 79.3 161 .A..C......A.G.............AT CGACCTCCTGTCGACCAGCTGCGCACGTTGGGCGATGTAGGGCCGCCCGGCTGCATCGCCACAGTCGAGTTGCCAGTTAGGGCGCTTTGAGTTGTATGTCGGATTCAGTGAAAGTGCTGAGAATCAGGCCTCACCTGGGAGAAACTTGCAGGTGACGCAGT AA,G [30844,30865] 30679 29 100.0 32 ............................. AGCGCCGTTTTCGTGTCCACCCGGAAGATCTC 30618 29 100.0 33 ............................. GAGGGGAGTACACCCCGGGTGCACAGCTACCGA 30556 29 100.0 32 ............................. CTGACATCGGTCCAGGGACCCGGATGCCTCAA 30495 29 100.0 32 ............................. TCAAAGCCAGTGAAAGGCACCTCGCAACGGGG 30434 29 100.0 32 ............................. GGCGGGGGCTTTCCGCCCGCATGAGCCAGCTG 30373 29 100.0 32 ............................. TCCGACCCCTCGTCCGAGGCCGGCTGCGTCGC 30312 29 100.0 32 ............................. GAAAGGGGCTTCACATGCCTCAATCCTCCCAG 30251 29 89.7 32 ...........A.G..........G.... AAGGGGATCCGCCCTGGGGGAGGAACAGAACC 30190 29 93.1 0 ...........A..............T.. | A,G [30162,30166] ========== ====== ====== ====== ============================= ================================================================================================================================================================= ================== 10 29 96.2 47 CTGCTCCCCGCGCCCGCGGGGATGTCCCC # Left flank : TGGGGATGGGTCTGGGAGAACGACGAGGACTATCCCTGGCTGCTGGACCCCAGTGGGCCGTTCGTCGAAACGGAAGACTGGGCCGCCGAGCAGATAGCGACCCTTCGCGCGGCCGGGCACGAACCCACTTTTCGTGACGAAGACGACGACTATCTGGACGACTACCGCAAGGCCTTCGGCGATGCCGGTGACGGGACCTGGCATCTGGAACGCGGGCGGGGCGCGATCCACTCAGCGACAACGGATGCGGAATGACCGGCTGGCTCATCGTCGTCGGTCCGCACCGCGGGGAACTCCGCGACCGGGACTGCGCGGTCAACCCCGCCCTTCCAGTCGTACGTTGATACACGGAAACCGGCACACCTTCCGTAGCTCGTACCTCGAGTGGCTTGAGCAACGCGAGAGGGCAGCTCGATGATCAAGGGCTGGGGCCCGCCCCTCGCACAGCGCCTATCAACCTTCCCTTCGAAGGAACTGCCCCCAGCGCCGCTTGCCTAGTG # Right flank : TTGCGCTCGAGGAGGGAGCGGCCCATCGCGGCCCGTCCCTCCTCCGCCACTCCGCTGAGTGTCATGTCAGGCGCAGACCTTCGGTCCGCCGTCGGGCGACGGCGGGACGGGCAGGCGGGGCCACGGCTGCCCGGGCACACCGTCGCCGGCCCCGCCGCCTGCCAAACGGTAGATCACATCTGCCTTCATGTTGCTCTCCCTACGTGAGTTCATCGTGCCGCGCCTGCGTAGGCGCGGGGTCTACTTCGGAAAGCCCAGCTCGTACAGAGCCCGGCTGTCCGGGCAGTAGTCGCGGTGGGTGCAGCGGGCACACACCCCGATGTGGATGTTGTAGACGCGCTTGGCCTCCCGGCGTAGGCAACGGCGGCAGCTGCTCGGCTCCCACCGCAGCAGCTCTCCCTTGACCACGCTGACCCTCGCGCTCAGGGCGTCGGTGGCCGCCCCGCCACACCACACACAGCGAGTCCCGGCCAGGCGCTCGGCCGGGAGGTCGGCTGCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 32183-31850 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVS01000040.1 Streptomyces galilaeus strain JCM 4757 sequence040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32182 29 100.0 32 ............................. CTTGCCGAGGCTGGACTGGCCCCAGTGTTCTT 32121 29 100.0 32 ............................. GTCGATGCCTACAGCGGCGGCGCCATTTCCGA 32060 29 100.0 33 ............................. ACCGACGCGGCGGACGGCGTCGCGGAGTTCGAG 31998 29 96.6 31 ............................G CACCTCCTACGCCCTCGCGGCGGCCGGGATG 31938 28 96.6 32 ....................-........ GTGGCCTTGTTCCGCTCGCGCATCGGCTGGTC 31878 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.9 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGCGTCATCGTTACCGAGGCCCGGACGACATTGGATGAGTTGTTACGCACGATGACTGCCCCCTGTACGTCGGTGCCGCTTGCCGTCCTGACTGCGCAAGCCTGTGCACCCACTTGAGGGAAAACCGTTACGGTGCTGTCGCACTTCCACTCGCTGGGGCTGGAGGTGATCGGGTTCGTATTGCCGTAATCGCTCCAGTTGCCGTCGGCAGCTGCGGCGGGTCCGGCGGTCGCCAGGCTCAGCCCGACACTTGACAGCAGGACCGCGGCACATGTCAGTGCGGTTTTGGTGCGGCGTGTACGTATACGCATGTTGCCCCTTCGTCTCCGCGCCGCTTCTCACGGCGCGCGCAAATCGCCGCGCGCATGTCAACCTGAGCAGACGGCGACTGCGGTCAGCCTAGGCGTCCTGCCGGTGAGCGGTACCTATAACCTTTCAGGGTGTATTAGGCCCCGGACTGGTTACACCACTCGGCGGGACGCCATCCCGCGACCAGCGAG # Right flank : CCGCCCTCAATATTCCGGCACCCCGGATCCTGCACTCGCGGGGTGTGGGAGCAGCAGTCGGCGGGCGACCAGCGCCGTGGCGGCGAGCGCGCAGCCAAGGCCCACCAGCGATGTCGGATCACGGGCGTGAGGGCCCTGCTTCCCTGATGCACGGGGTAAGACGGGGGTTGGATGTCGGCGGTAGGAGCTAAGGTCCGTGCTCGCCGTTGATAGGAGAGTCGTGAACGCGTACGTGACCTGGTCGGGAGTTCGGGAACGCGTCATCGCCGTGGAGGAGGCCGAGCGTCGAGCCCGTGGTCTTGGACCGTCTCGATACCCAACGTTCGAACCCGTCCTGGCTCCCGCTAGATCGCCGAGGCCGAAGCGCAGTTTGGTGTCGCGCTCCCCGACGAGTACCGCACGTTTCTGGCGGAGGTCGGGGCCGGCGGACCCGGGCCGGCGCTCGAGCTGACGTCGTTGCGCGAGATCGACGGGAGGTGGGGATGGGTCTGGGAGAACGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 35341-34153 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVS01000040.1 Streptomyces galilaeus strain JCM 4757 sequence040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================= ================== 35340 29 89.7 33 ............A.......A....G... TCACGGCTACCTGCGCTACCCCTACACCGCGGT 35279 29 86.2 14 ........T.....TA.........G... AAGCTGATGGGTCC Deletion [35237] 35236 28 93.1 32 ................T...-........ GCCTGGTGGTCCGTGTTGTCCACGCAGTCGTC 35176 29 86.2 32 .......G.....AA............T. GTCGTTGCCGACCCCGAGTTGAGGTTCACCCA 35115 29 65.5 27 ....G.........G.GAT..T...AGGT GATCCGAGCGGGCACGGATTCCGACGG C [35093] 35058 29 89.7 177 ..........T.T............G... GGACCTCGGTGGCGCCAGTTCCGGTCGTCGCCGGCGCGGGCTCGTGCGCTGTGGGGCCGCCCAGCGGCATCGCCACCATCGACGCCTGCCAGTTAAGACGTTTTAGGGTGTATGTCGGAGTCGGTGAAAGTGCTGAGAAATCAGCTCTGCTCGGGAGAAACTTGCAGGTGAAGAAGT 34852 29 100.0 32 ............................. GTCACCCGAGGGTTACCCCACCGCAGGGAGGG 34791 29 100.0 32 ............................. GTGCTCGGGAACCTGATCGCGGCGGGTGAGGT 34730 29 100.0 32 ............................. CCGCTCCTCGATAAGGCGCTCGATTGCCGCGA 34669 29 100.0 32 ............................. CAGTGCGACGCCGCCTGGCTGCGGTGGGCGGC 34608 29 100.0 32 ............................. CGCGGCGGGTCCGGGAGCTTGGCCTCGTCGGG 34547 29 100.0 32 ............................. AGACAGGGGTCTACGTGTGCGCACCCGCACAC 34486 28 93.1 32 .................-..........G AACCGCGTCGTCGTCATCTGCTTCGATGCCGA 34426 29 100.0 32 ............................. TCGCCCACCTGGAAGTTGGCCGCCGTCATCCG 34365 28 96.6 32 .................-........... CACACCGACCCAGGCTCCTGGCCCTCGTTCTC 34305 29 96.6 32 .....T....................... CGGCACCGGCTGCCCAGTCGCCCGAGCACGCT 34244 29 89.7 34 ................A........C..T CAGGCGCCCCGCGGTCGCCGTACTGAGGTCCCGT 34181 29 89.7 0 .....................G....TG. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================= ================== 18 29 93.1 39 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TCAGCAAGAGAGTCGACCTGACAGGCAAAAGCCGGCGTCGCCTTACCGATGTCATGCACACCCGCCAGCCACACCACCAGCCTGCGCCCATCCACCTCACCACCCGGCAACGCCGCAGCGATCAACCTCCGCACACCAGCGGGCAGCCACTCGTCCCACAACAGGCCGGCGACAGCAGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAGCCATCACTGTCACGATCATGCTTCGCCCACACCGCCCGCGCCGGCGACCGAAGCCGCGACAGCAGGCAAGAAAAGGACGTCCCCCCACTCGTCATGCAATATGCCTACACGCAAGACACTGGCCACAAGACCTGATTCAAGAAAGTGGAGCTGATCACCGAGATCATGATGAAACAGCGATCTGCCACCCTGGGCCTGGGCATACGCTGATCAGTTTGGAGGCGATAGCTACTCCCGCATGCGCGGGATGTTGCCACTCCGGTGAGCCACCGGAGTACGGTCGGCAC # Right flank : GCCGTGGTGGTCGGCGCCGCCACAACGGTCAAATGCTCCTTGCGCCTGGGGGACGGCTGTTCGATGACCTGATGATGGCTGGTTCGTCGCTGCCCTCCCCCGGCGGGGCGGTACTGGTTGAGGAGTCCTGCTGCCCGGCTTCGCCTACCCCCCGTGTCCAGCCGCGCTGCTCCCGCTCCCACCCTCCGGCAAGTGGTCCCGTTCTTCTCGCCCTCGTCCGCGGCCACCGTGTCATCGCCTGCGCGGGACCGTCGGGTATCGCTACAGCCACTCGCTCCAGAACATTTCGCTCTCGCTGTCGCCGACCATGAGCCCGAGAACCTCGCGGCCGCCGTCCTCGGTGATGCCGGTGGCGATGACCACGGCCTGGGACACGATCTGGTGCTCGACCCTGGCCTTGCAGTACGTGGCGTCGAGGTAGATGTAGGGGAATCGGACGTGGTCCAGGGGCCGGGTGCGGAACACCGTCAGTTCGGCGTCCAGAGCGCCGCAGATCCGTG # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.89, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 7 45013-46505 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVS01000040.1 Streptomyces galilaeus strain JCM 4757 sequence040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45013 29 100.0 32 ............................. ATCATCGTGCCGTTCCCCGCGCGCCGGCCCTC 45074 29 100.0 32 ............................. GGGGCTTCCATCTCGAAGAGGCGGGCGGCAAG 45135 29 100.0 32 ............................. GCCTTCGGGGACAGATGGAAGTGACCGTCCGT 45196 29 100.0 32 ............................. ACACCACCTGGCCGAGGGATTCGCCGCGTACC 45257 29 100.0 32 ............................. GACGGCAGCGGCGACAGCCGCACCGGGACCGC 45318 29 100.0 32 ............................. ACAGCGTGGGTGATGTTGTTCGCCCCGAGCTT 45379 29 100.0 32 ............................. GATGACGCCGAGGTCGCCGTCCGCGACACCCT 45440 29 100.0 32 ............................. CGTGTCCGCCTACGCGGACACCGCCCCGGAGA 45501 29 96.6 32 ........T.................... TGGCAGGCAGCCGCCGCGGTCTGGTTCTCGGG 45562 29 100.0 32 ............................. CCACCGATTCGGCATTTTGAATGCGGCATCCA 45623 29 100.0 32 ............................. GCACTGCCCGTCGACACCACGATCCCGGAGCC 45684 29 100.0 32 ............................. GAGTGGCCGGTGGAATGGGAGGGCCTGGTCTC 45745 29 100.0 32 ............................. GACGTCCGCGGACTCCATGACCGCCTTCGCAA 45806 29 100.0 32 ............................. AGGTCGACGTGCACAGACTGGTCCCCGGTGAG 45867 29 100.0 32 ............................. TCCTCCGCGACGGCCGGTTCCGGCGGCGGCTC 45928 29 100.0 32 ............................. TGGTCGAATCCTGGGGTGCTGATGGCACCGCC 45989 29 100.0 32 ............................. CGGTTCACGGCGTCGCAGTAGCGGGAGAACGC 46050 29 100.0 32 ............................. GAAACGCCCGACGAGTACGCGGACGGTCAGGT 46111 29 100.0 32 ............................. AGGCTGAGCCGAAGGGCCTGCGGTGAGGCTCA 46172 29 96.6 32 ............................T CCAGGCGGTAGACGGGCCGCGCGAGGCCGAAG 46233 29 100.0 32 ............................. GACCACTACGCGCAGGTCACGATCGCCACTAC 46294 29 100.0 32 ............................. CGTTCACGCCGACCGTGACCGGCATGTCCGCC 46355 29 96.6 32 .......................C..... CGAGCTGGGCGGGCTCCGTGCGCTCCTTGAGG 46416 29 96.6 32 ............................T GGCCCGGTGCGAAGTCGAACCTGGCGCGAGTG 46477 29 82.8 0 ...................A.CCCT.... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.8 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CGGCCTCAACCACGACGATGACAGGCACGACTACGAGCGGGTGAGCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCGGGACTGCGCGGCTTCCTGACGCGCTGGCTGCTGGAAATCTCGGCAGGCGTGTTCATCGGCAACCCGTCAGCGCGGATCCGCGACGCACTCTGGGACGAAGTCCGCCAGTACGCCGGGCAGGGACGAGCCCTGCTGGCCCACACCACCAACAACGAACAGGGCTTCACCTTCCGCACCCACGATCACGCATGGCGCCCCATCGACCACGAAGGCGTCACGCTGATCCACCGCCCCGCCCCGAAACCATCCACGGACACCAGCCTCACTACGCCTGCCCCCGCCGGCTGGAGCAAGGCCGCGAAACGCCGACGCTTCGGAAGAGACCGATGAACCTCAAGAGCGATTTCGGAGAAATGCCGGATTCGGTGAAAGTGCTCAAAAGCCCGCCGGGCCTGACGTAAAACCCCTGGTCGCGCAGT # Right flank : CGGCCGAGCTGGGGGCAGAGCGGACTGTCAGCCCGCAGAGCCTGGTCGCCTTTCGACGGCAACTTCCACTCCGCCCTGCCCGGCCTGCCCGCGTCACGGTCCAGGTCCTGCACCGGCTCGGCCAGGGCGACCTGCCGATAGTCACCGCGGCCGGGCCGTCGTCGCCTGCGCCACCGAGCCCCGCGAGGCGCCGGGCAGAACGTCCGGGACGACGGAGACGTCATCGCCCTGGAGAGGGCGGCGCCGTGTACCGGCAGGCGCACGAGTACTCCGTTTGCGGGAGCCACATGATCGTGCACCTGGCGCGGCACAGCCGCGAGGGTGAGGCGATCGAGGTGATGGAGGCCTTGGCCGGTGTCCTTGGCGGGGCCGAGGACTGGGATCCTCTATGCGTTCTGTTCCCTCTACACCGGCTACGGCCGCCCCGAGGACGGCCTGGTCTACCTCGAAACCGTCCCGGAACACTCCGGCGGAGTTCAGTCCCAGGGGTTGGAGTCGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //