Array 1 17695-18820 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNA01000064.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N4630 SEEH4630_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17695 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 17756 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 17817 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 17878 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17939 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 18000 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 18061 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 18122 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18183 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18244 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 18305 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18366 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 18427 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 18488 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 18549 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 18610 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 18671 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 18732 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 18793 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35077-36740 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNA01000064.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N4630 SEEH4630_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 35077 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 35138 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 35199 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 35260 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 35327 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 35388 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 35449 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 35510 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 35571 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 35632 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 35693 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 35754 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 35815 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 35876 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 35937 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 35998 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 36059 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 36120 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 36181 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 36242 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [36284] 36284 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 36345 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 36406 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 36467 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 36528 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 36589 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 36650 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 36711 29 96.6 0 A............................ | A [36737] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //