Array 1 128035-129529 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMJF01000011.1 Dickeya fangzhongdai strain CGMCC 1.15464 sequence11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 128035 29 93.1 32 ............AG............... TGAGGTATACCCGTCAGCCAGTTGGCGTTGCC 128096 29 93.1 32 ............AG............... CGTTGTCATGAATCTCTGGTGGTATTCGTCAC 128157 29 93.1 32 ............AG............... GGCAGACCCGCCAGCTGGCAGGACTCCGGGAT 128218 29 93.1 32 ............AG............... AGCTGCCGGAATTACAGCCGGACGGACACGGC 128279 29 93.1 32 ............AG............... CTAACCAGCGCATCAAACTGGTTCTGCGTCAG 128340 29 93.1 32 ............AG............... CGGTTTACCTGTTGCCGTACAGATACCGCTGT 128401 29 100.0 32 ............................. CATACGTTGATTCGGTTATTACCGGGGCTGTA 128462 29 100.0 32 ............................. TACGCCAAATACAATCCAGAGTACCAGCATGC 128523 29 100.0 33 ............................. TATGCTAGGTAGCTGGTACTCATGGCAATGAAC 128585 29 100.0 32 ............................. GGCCTTGCTGCGTACGCCCTCACCGAGGCTGT 128646 29 100.0 32 ............................. TGCGCTAGACACAGCACAGTAGCGGTACAGCG 128707 29 100.0 32 ............................. AGCGACCGCGCAGGCCGTAGCCACCTCTGCCC 128768 29 100.0 32 ............................. CCTTCTTTTGAACAACGCACGCATCAATCCTA 128829 29 100.0 32 ............................. CTCATCGCGGCCGACCAGGCTCGTCTGAAAAC 128890 29 100.0 32 ............................. CTGACCGGTATCAAGACGGAAAATCAGGAAAA 128951 29 100.0 32 ............................. GATTACGAACGGCACTTATTCCGAGCGGGTAA 129012 29 100.0 32 ............................. GATGCAGCAAGACAGATATATATTTCTTCCGA 129073 29 100.0 32 ............................. CTACTCCTGGCGAACTTCCTCTTCCTGTAACA 129134 29 100.0 32 ............................. CGTAACATCCTGACCAGCACCTTTATCCCTCA 129195 29 100.0 33 ............................. AGATTCACGAGCTTAACGGCAAAACTTACCTGC 129257 29 100.0 32 ............................. GTTGATGCCATCATTGCAGAAAACGTGTCGCT 129318 29 100.0 32 ............................. CACGTCAACAACGGGTTGTCTGTTCCACCGAT 129379 29 100.0 32 ............................. ACCGGGGCGCGGTGCGTTCAGTTTCTCAGCAT 129440 29 100.0 32 ............................. CGGGCGGCCTCTTTGCGCATCAGCTCAATGAT 129501 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCACCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCCTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAGATGATCTGGCAACAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTCGAGTTCCAGACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAATGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : GTTGATTAAGATAGCCTGATCGGCGGCCGGTTACGAAAAGCCACTACCCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGAGGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCTGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGGGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAACTCGCTCACTTTGCGCACGCCATCCACAATCCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAATGACCGATAAGCTCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 148171-148559 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMJF01000012.1 Dickeya fangzhongdai strain CGMCC 1.15464 sequence12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 148171 28 100.0 32 ............................ ACATAGTCATAGGCCCCGAACGCGGTTTCGCT 148231 28 100.0 32 ............................ CATTCGATGATCTCAGTAAGTTGGGCGTTATG 148291 28 100.0 32 ............................ GTTGCCCTCGGCCAGACCATTCGGCTCATTAA 148351 28 100.0 32 ............................ TACGACACCAACATCTGGCCGGCGCCGATCAC 148411 28 100.0 32 ............................ GCAAGCCCAGTGTGCCAGCCAGCAAAAAAGCC 148471 28 100.0 32 ............................ CGACCACTTGGCACGATTGCCACGTGATTACA 148531 28 75.0 0 ............AC.......A..TCCC | A [148552] ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCTACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCCCCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAAAGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAATCCTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCAGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCACGTTGGTAAGCGGGTAGCCCAAACTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGTTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACGCCGAGCGACACCAGCGGAATGCCGCGGCGATTGACCGTCAGCAGTGCGCGCGGCGCGTTACCTTGCTGCGCCAACCCAAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 154072-153322 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMJF01000012.1 Dickeya fangzhongdai strain CGMCC 1.15464 sequence12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 154071 28 96.4 32 ............G............... ACGACATGGATGCAACATACGCACAAAACGTA 154011 28 96.4 33 ............G............... ACTGGGCTAAATTTTGTCTCCCCGATATTGTCA 153950 28 96.4 32 ............G............... TACGTGCAGCACCGGACCCAGGTCAGCCAGGC 153890 28 96.4 32 ............G............... GGAGTACACCCACGCACCGAACTGGTCCAGAA 153830 28 100.0 32 ............................ GCATAGGATATTAGTCACATGAAAACCATCAA 153770 28 100.0 32 ............................ GCCGCCGGCGTGGTCGGTGCGGCGCTGCCGGA 153710 28 100.0 32 ............................ GCCGCCGGCGTGGTCGGTGCGGCGCTGCCGGA 153650 28 100.0 32 ............................ CAATCCTCAACTTCGCGTTTTAACTCCCTGAT 153590 28 100.0 32 ............................ ACTCAGGATAAGCCATGACGCTTTGTCTTATT 153530 28 100.0 32 ............................ AACATCCATCGGGATGATCGCTGCAGCGAATC 153470 28 96.4 32 ............G............... TTGTTGTGCGGGCTGCGTTGTTGAGGCCGCCA 153410 28 96.4 32 ............G............... AGTCAGGAGTTACACAAAACTGTTCTGAAAGG 153350 27 82.1 0 ....T........C.........-..CG | GG [153327] ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGAACTGGCGGCGCTGGAGCAAACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATTACCGAGCCGCTACCGGTGCCGGCGGGGGCGAAGCACCGCATCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGACTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACTGAGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTCTCCAACGGACAAGCGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGACAAACCGGTCGCCGGAGCGTTCTCCAGTTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGAGCTAACGTATTGATTTTAAATACCGAAATCTGGCCGCCAGAAAAAAGGTTTTTTTCGTCAAAATAGCGTTTTTTCTTTAATAATCAGGTGATAAGCGATAATTCACTACA # Right flank : GGGTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGACTCGCTACCCCGGCATATATTCACCAGTAACTCAAACTCCCGCTGTTTTTCAACAGCCCCATTCCCGCACAGGAATAAAAAAATCCCCCACCCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATACGGCCGCTGGCGATAAGGTACACGCCGAACTCTTCGCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 162625-163555 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMJF01000012.1 Dickeya fangzhongdai strain CGMCC 1.15464 sequence12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 162625 28 100.0 32 ............................ TGGAAGATATCCGCGCCGCCTTACAACAGGCA 162685 28 100.0 32 ............................ TGGAAGATATCCGCGCCGCCTTACAACAGGCA 162745 28 100.0 32 ............................ AAAGGTAGCACCGAGCACGCCATAAAGACGGA 162805 28 100.0 32 ............................ GAATTCCCTGATACAATATCAACCTTATTATT 162865 28 100.0 32 ............................ ACCCAGCGCCATTGATGCCCCGCCCATGATCA 162925 28 100.0 32 ............................ GCTGATACGCTGATCCGCCGAGAAATCCCGGA 162985 28 100.0 33 ............................ GAAAGAAATTACCCCCGAAGTCAGTAACTACAT 163046 28 100.0 32 ............................ GTATTCAACAAACCGGGTGGCGGTCTGGTCTA 163106 28 100.0 33 ............................ AGCGGCTTGAATCCGCATTTCGGGCAAATGTAA 163167 28 100.0 32 ............................ GTTCTTGAAATGGATGCATCGACACAGAGGGC 163227 28 96.4 32 ........T................... ATTGCGATGATTTTCACCAGGTTGCTATCCCC 163287 28 100.0 32 ............................ TATGCCGCACAAAGACAAAGGCCATGCTGGTA 163347 28 100.0 32 ............................ TTGCCATCAGCAATCTGGTCGGCAGTGTTCAA 163407 28 100.0 32 ............................ TGACTGAAGAAGCCACCATACCAGAGCAGACA 163467 28 92.9 32 ...........GA............... TCTTACCCTCATTCAGTGGTTTCATTCATGCC 163527 27 82.1 0 ....................A..G.CG- | GG [163548] Deletion [163554] ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.2 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CGTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATGAATTAGAAAACACGTAATCTACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTCAGCCGCCTTTTTCGGCATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGAGATACAAAGGGTTAGAGTCAACGAGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAACGACTCTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGCCGCCGTCCGACGGGCCGGCGACGGCGCTCCGTTGCTGCCCTGCGGCGTCAGGCGGAACGCGCTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 173130-174197 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMJF01000003.1 Dickeya fangzhongdai strain CGMCC 1.15464 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 173130 29 100.0 32 ............................. CGTTACACCCGAACCACCGCCTGTACTGTGGC 173191 29 100.0 32 ............................. TTGGTGCCCGTAGAACCCACGGAGGAAATGGT 173252 29 100.0 32 ............................. ATGTTATTGCTCTTTTTGGTGATCCATCAACA 173313 29 100.0 32 ............................. GTTCGTCGAAAATTACGCTGACAGTTCTGGTC 173374 29 100.0 32 ............................. GTAGCTCAAGTGACCGAGGCTGTTCGTGAGAT 173435 29 100.0 33 ............................. CCTGAGATCGTCTTTACTCATCGCCCTGCAGGC 173497 29 100.0 32 ............................. GGGGTTAATTTGAATGAGGTAATTACATTAAT 173558 29 100.0 32 ............................. AATAATGAATAATCTTCGATCACTATTCATCA 173619 29 100.0 32 ............................. ATTCGGATGCCGTTGCCAGCATCCGAAAATGA 173680 29 100.0 32 ............................. TTCTGACAGGTTGAGCGCAACCATGTCACGCT 173741 29 100.0 32 ............................. GGACTGATAATGCCAGCGCAACAGAGCAGGAG 173802 29 100.0 33 ............................. TTCTGAACGTCAGTAGGTTTAATATTTTTATCC 173864 29 100.0 32 ............................. CTCATCGCTCAGCTTTTTCCAATGCTCTTCAG 173925 29 96.6 32 .............T............... ATGGCGACCAATCCAACGGTTGCATTAGCTCG 173986 29 100.0 32 ............................. CGTGCTGTGACGCTGAATCAGAATAAAGTTGT 174047 29 96.6 32 ..........................T.. ACTATAAACTGATGCTATAACTGGTGAAAAAT 174108 29 100.0 32 ............................. CTACCGCGATTTTCTGCGCCTTGAACTGATAC 174169 29 89.7 0 .............T...........G..T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCTAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTACAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCAGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACATAAAAAAGTTGGTGGAATTTTTCAGGTTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : TGCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCATTTAATTTCTTTTTGATGTGAATAAAATCACATAACAGAGTGCGTTATCAGGGTGAAATGCCCGGAAACGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGACGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATTTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTGACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTGGTGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //