Array 1 146067-146887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBI010000005.1 Salmonella enterica subsp. enterica serovar Derby strain HA9-EX2 YZU1238_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146067 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 146128 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 146189 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 146250 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 146311 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 146372 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 146433 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 146494 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 146555 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 146616 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 146677 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 146738 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 146799 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 146860 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163528-165266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBI010000005.1 Salmonella enterica subsp. enterica serovar Derby strain HA9-EX2 YZU1238_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163528 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 163589 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 163651 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 163712 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 163773 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 163834 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 163895 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 163956 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 164017 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 164078 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 164139 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 164200 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 164261 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 164322 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 164383 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 164444 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 164505 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 164566 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 164627 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 164688 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 164749 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 164810 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 164871 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 164932 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 164993 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 165054 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 165115 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 165176 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 165237 29 93.1 0 A...........T................ | A [165263] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //