Array 1 91305-89448 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJNBL010000011.1 Candidatus Nitrotoga fabula isolate Candidatus Nitrotoga sp. ZN8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91304 28 100.0 32 ............................ TCAACCCTGCTTCCAGCATTTCTGCTGCATGT 91244 28 100.0 33 ............................ TGGATAACGGCGGCAGGACTTCCGGCGCGGGCA 91183 28 100.0 33 ............................ TGAGTGCCGTGAGCATGATTGCTCCGGCTACTG 91122 28 100.0 33 ............................ TAATGGCAGGCAAACCAGGAATGAAGGGCGGCG 91061 28 100.0 33 ............................ CACACGCACCTGGGATGCGTTCGTCAAAGGCTT 91000 28 100.0 33 ............................ TACCAGCCGACCACGGCTCCGGGAAAGCTGATC 90939 28 100.0 33 ............................ CCGGAGAAATTCTCGAACATGCGTAATCAAGGA 90878 28 100.0 33 ............................ TGCCTGCAGCAAAATGGGAATTGTGGAAGATAC 90817 28 100.0 33 ............................ CTTACCGGGCCGAATGCGTGACTCTGCCACGGC 90756 28 100.0 33 ............................ CCGAATCCAGCGCCTTTACATGGATTTTCCAGG 90695 28 100.0 33 ............................ TGTTGTGGTGGGTGGGAAAACTCTGAAAAAATA 90634 28 100.0 33 ............................ CGGATGATCACGCTGTTCAAGCGAATAGATGCA 90573 28 100.0 33 ............................ TGGCTTTGATCGATGGGCTGCATTTCCACGATA 90512 28 100.0 33 ............................ CGGATTCCACACGTGATATAAACGACTCATCTG 90451 28 100.0 33 ............................ TGTTAATTGATCCAGTAAGATTAGGTAGAGGCA 90390 28 100.0 33 ............................ TCCATAGGTGGAAGTCTGGACAAGCTGCGCGGC 90329 28 100.0 33 ............................ CAAGAATGGATTACAGCGGCTGGGCTTCCGGCG 90268 28 100.0 33 ............................ TAAGGCTTTGTCTGGCGTGCCCGACAGGAATCG 90207 28 100.0 33 ............................ CAGCTCCATAAAAAAGTTACTGTAAACATGCTG 90146 28 100.0 33 ............................ TAATAATGCTTTTCCAGAACCAGTTTGAGTTAA 90085 28 100.0 33 ............................ CGCCCCGGGAATGGGGCGTTTCTGTTTATGTAT 90024 28 100.0 33 ............................ TCCTCCACGGCATTAATTATCCATTCAGTCAGC 89963 28 100.0 33 ............................ TTATACGCCTGTCTGATTTGTGTGCAACAATCA 89902 28 100.0 33 ............................ TGAGCAAGGAGACTTTGCGTTCAAGATTTGACA 89841 28 100.0 33 ............................ TATCCCCAAGCAAAGCCTTGCACTCAATGCTGA 89780 28 100.0 33 ............................ CAGCGCAGGCGGCTCTGGCATTGGGGGTGCTGG 89719 28 100.0 33 ............................ TATCACCCAACAACGCCTTGCACTCCTGACTGA 89658 28 100.0 33 ............................ TACTGCTAATTTTGGGCGTTTTGGGCGGGGGTG 89597 28 100.0 33 ............................ CACGATGACCTGGGGCAGCTCGTCCGGCAGCGA 89536 28 100.0 33 ............................ TAAGACCATGCGGATCCATCACTGGAAAACCCA 89475 28 96.4 0 .............A.............. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.9 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : AGTATCTGCTGCATTTCGTCAGCGTGTCATTGAAATGGATTTACTCGGAAAGATAGGCCAAGATATTGACTCTATATTTGGGGTGAAAAATGCTCATCGTGATAGCCAATGATTTGCCGCCTGCCGTGCGAGGGCGAATGAAGCTTTGGTTTATTGAGCCACGTCCCAATGTGTTTGTTTCTGGATTAAAAAATGCGGTTGCTAAAAAGGTGGTGGATTATTTGCACAAACACTGTCCGCGAGAAAGTGGCTTGATGATTTTTAGGTATATTCCAGAAACACCTGGTTATGAAATACTCGGTTTAGGCGATACTAAGCGTAATCTTACTGAATTTTCTGGTTTACAATTAATCATTGAGAAACAAATGCCAATATCAAATGAAAGTTGATATTTAGCATCTCAATATATGAAGAAACTAAGTTACTAGAATATAACTTAGTAATTTTTACTTTCGCTTTTTAACAATATGTTTGTCTCGTAATGCCTGTATTTACGTAGT # Right flank : TATCTGCCGCATCCGCCCTGTTTGGTCTTCCCCACGCTCGTACCCAGACAGAATATCTTTCACGTCTCGCCCCCATACCATGCCTCACGGTATAATCACAGCTTTTGATACGGCGACATGGCCTGAATGTTAGTTTTTCGCGGATTGAATACGGCAGACAATAAGCCGGTGGCATTAACGATAGGTAATTTTGACGGGGTGCATCTGGGTCATCAGGCGATGCTTGAACAATTGAAAGCCGCTGCGCGGCAGCTCGCCCTGCCTTCGGTTGTGCTGGTGTTTGAACCGCAGCCGCGCGAATTTTTAACCCCGCAGGCTGCCCCGGCAAGGTTGACCAGTCTACGCGAAAAACTGGAGTTTTTGGTGACGCTTGGTGTGGACCGGGTTCATGTGTGTCATTTTAACAGTAGTTTTGCGCAGATGAGCGCGGTTGATTTCCTGCATGCTATCAAGGACAGATTGCTGGCCAGATTTATTCTGGTGGGGGATGATTTCCGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 78655-79123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJNBL010000002.1 Candidatus Nitrotoga fabula isolate Candidatus Nitrotoga sp. ZN8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 78655 37 100.0 37 ..................................... CCTTCCAGACAGCCGATGCAAATGCTTTGCGTGCTGT 78729 37 100.0 34 ..................................... TATTGAGTTGGTGCAAGATGCTAGCACGATGCTA 78800 37 100.0 36 ..................................... ATTTCCTTTTTGGTTTAAAAATTTAGCTTGTTTTCG 78873 37 100.0 34 ..................................... ATATACGTACCCCGCTTTTAATTTTGGTATTTCT 78944 37 100.0 35 ..................................... AAAAGGGAGGGTTTAAGACTCACACAACTGGACTG 79016 37 100.0 33 ..................................... CTTTAATACTTTACGCAAAAATCCATTCTCCAG 79086 37 81.1 0 ...........................AA.CCAGC.. | C [79114] ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 97.3 35 GTAGCGCCCGCCCTTTGGGGTGGGCGAGGATTGAAAC # Left flank : GCTATCTTCCATTTCTTTACCGTTAAATTCCATGCTGGTTATTATTACTTATGATGTATCCACAATATCCGCAGCTGGACGTAAGCGGCTGCGCCGCGTTGCGAAAGTTTGCGAAAGTATTGGGCAGCGTGTCCAGAATTCAGTCTTTGAGTGTCAGGTTAATCAAATGCAGCTTGAAGAATTAGAGCGAAAGTTGCTTGCTGAAATACACGAAAAAGAAGATAGCTTGCGCTTATATCGCTTGACTGAGCCGGTGGAATTACACATAAAAGAGTATGGAAATTTTCGGGCTGTGGATTTTGAGGGGGCATTGGTATTATGATGCGCGAACCAGTAGTAATGACCTAAACATGGCAAGTTCGCGTTATGGCCAATATATTGATGGAAGTGGATTTTTCTCTTTCATCGTTTAATTGTTCGGGCTCTCCACTGCACAAAGTTCGAGAGTTCGCACAAAGTGTGCTTTATAACATTACAAATCATAATGTTATAAGCAAACT # Right flank : CGAAAATGGAACAAGCGCCATGAGCGAACGAATGGCAAGAAATTTTGCCATGCATAAGACGAGTCAGGCCATCTGCAAGTAAGTAATAGTAACAAACCATCGTGCGGAATTTCCGCCCGGATGTAATAGAGATGCTTTCGCCGCAATCTGTCTGGAAAACTGGTGCCTGGTCACACTTATTTAGTGCAGCGTACTTGACCCGATGCCATAAACATGTGACGGTTGCGGTGGATCATTACAATCCAATCAACCTTGACCAGAAAAATAGCTGTTACCCGACAGCAACAGCTATTTTAACCGATTGCTATCAGCCCCCCAGACCGAGGAAGAGATCTGTGCTGCAGATACCATGCCAATGATGAACGATATTTCCATTGTTTAATACTACGGTTGTGGAAGGAGACATGGCGAATTTCACATCTACACCAATATTCAGGGTATTGGTTGGCATGGTGATACCCAAAGATAGTGCTAATGAGTTAATACAAAGGTTTTTCAAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGCCCTTTGGGGTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.20,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //