Array 1 172-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJT010000193.1 Photorhabdus laumondii strain IT4.1 Plum_IT4.1_193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 171 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 111 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 51 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : ATACGTTTGCACTCTTCTATATAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3373-3104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJT010000193.1 Photorhabdus laumondii strain IT4.1 Plum_IT4.1_193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3372 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 3312 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 3251 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 3191 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 3131 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : ACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1879-429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJT010000111.1 Photorhabdus laumondii strain IT4.1 Plum_IT4.1_111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1878 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 1818 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 1758 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 1698 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 1638 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 1578 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 1518 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 1458 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 1398 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 1338 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 1278 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 1218 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 1158 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 1098 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 1038 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 978 28 100.0 14 ............................ CATACCAGAACTAG Deletion [937] 936 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 876 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 816 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 756 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 696 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 636 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 576 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 516 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 456 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3299-1951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJT010000025.1 Photorhabdus laumondii strain IT4.1 Plum_IT4.1_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3298 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 3238 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 3178 28 100.0 32 ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 3118 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 3058 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 2998 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 2938 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 2878 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 2818 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 2758 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 2698 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 2638 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 2578 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 2518 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 2458 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 2398 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 2338 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 2278 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 2218 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 2158 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 2098 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 2038 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 1978 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25029-24821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJT010000073.1 Photorhabdus laumondii strain IT4.1 Plum_IT4.1_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25028 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 24968 28 96.4 32 .C.......................... AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 24908 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 24848 28 92.9 0 .C..................A....... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTTCTCCCGCACACAAAGGGAGAGTGGGC # Right flank : AGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAAAACCATCACAGCATTTTAAGAAACAATAAGTTAAGTTAAATCAGTTGGTTATATTTTATATATGTGCATTGATGTAGAGCTATATATGATGTTGTCGCCACTTGAAATTAGTCATCTTCAATCTGATCGTAAGGGTTGAGAGTTAGCGCCAAATCAAGATGCTCTGGAGCAAAGTGCGCATAGCGCATTGTCATATTTATAGTGCTGTGACCTAATATTTGTTGTAGTACTAAAATATTGCCGCCGCGGGTCATAAAATGTGATGCAAATGTATGACGGAGCACATGGG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 464-611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJT010000059.1 Photorhabdus laumondii strain IT4.1 Plum_IT4.1_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 464 28 100.0 32 ............................ AACAACAAAACCAACATGTCCTCCACCAATAT 524 28 100.0 32 ............................ AAGCATCCCGATCACTTCGGTAATATGAATGA 584 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTCGATGACCGAATTCAGTGAATGGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACAG # Right flank : GCGGCAATGGCTGGAGAAGATGAACAGGAGTTTCGCCAACGCTGTATTAGTGGATTTCAAAAAGCTGATGCTTTAGACACCATGATTGAGGCACTACAAACAACTGCGCAACAATTGAGTCAGGTGGCACGATGAATATTCTCTTAGTTTCCCAGTGTAATAAACGAGCGCTAACAGAAACCCGCCGAATTTTGGATCAATTTGCTGAACGTAAAGGTGATAGAACTTGGCAAACGGCTATCACCCAGGAAGGTTTAAATACTTTGCGTAAGTTATTGCGTAAAACGGCACGTCGTAATACGGCGGTGGCTTGCCATTGGATAAAAAGTGGTGGTCAAACTGAGCTGTTATGGATAGTCGGGAATTTGCGGCGCTTTAACTCACGAGGAGTTGTACCTACAAATACAACACAACGTGATGTGCTGAAAAGTCAGGATGAAAATCATTGGCATAGTGTAGAGGCTATCAGCTTATTGGCAGCGATTGCCGGGTTATTTCAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9108-10756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJT010000059.1 Photorhabdus laumondii strain IT4.1 Plum_IT4.1_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9108 28 100.0 32 ............................ GTCTGTTACTTATGAACAATCAAAATATCTTT 9168 28 100.0 32 ............................ GATGATAAGCTATATCTTGTAGCGTTTAATGC 9228 28 100.0 32 ............................ TGCTTGGGATACGACGTCTTTTAAAGTCGATT 9288 28 100.0 32 ............................ TTTACCGTTCAGATAAGTGACGGCTGGATTGA 9348 28 100.0 32 ............................ AGCATTAAAGCCATCATATTCCAGTTCGAAAC 9408 28 100.0 32 ............................ TGTTGCTATCCATGATAACATTAAGATTAACA 9468 28 100.0 32 ............................ TGAATCCGAATTAACAGATTCCGACGCTATTG 9528 28 100.0 32 ............................ ACCTACATCCATCGGTATCCGGAGGGGTAATC 9588 28 100.0 32 ............................ CATGCCGAGTTGTGGATTGATGATAGTCAAAT 9648 28 100.0 33 ............................ AGTTTGAAACCATCACTACGAGAATTATTAAGT 9709 28 100.0 32 ............................ AGCGGCTACAATGTCTATGCTATTCAGTGGGT 9769 28 100.0 32 ............................ TGGGCTGAATTTATTAAACCTGACGCGCCGGA 9829 28 100.0 32 ............................ GATAAGTGACCGAAAACAGGCTTTACATCAGT 9889 28 100.0 32 ............................ TTGTTGCATCGTATGGTGATGAACAAGTTTTA 9949 28 100.0 32 ............................ GGTGAAGAAGATAACAAGTCGTATTACGAAAC 10009 28 100.0 32 ............................ AGCATGTAAGCGAAAAGGAAAATACCGATGTG 10069 28 100.0 32 ............................ TTCTCACCTTTTCGCCGCACATAGCGGCCACC 10129 28 100.0 32 ............................ TTTTCGCTTACATGCTGGACACTCTCCTGCAT 10189 28 100.0 32 ............................ TTATGGACAGGCATTATTAGCTTTATTGCAAA 10249 28 100.0 32 ............................ TGATAGAGCTTATTCGACAGCTATAGCAAATA 10309 28 100.0 32 ............................ TGACCTCTACGAAAACCTTTCAAGGCATTTCT 10369 28 100.0 32 ............................ TAACGGAGGACTATTACCCCACAGGGGCATAG 10429 28 100.0 32 ............................ TACGGCGAACGTATACAGATTGTGCGGCCACC 10489 28 100.0 32 ............................ ATGATTAATCCATCGACTGCGGGTAAATCAAA 10549 28 100.0 32 ............................ ACTACATGCTTCTTACTGACGTATATAGGTGC 10609 28 100.0 32 ............................ AAAATGCTGGGCTGCTTCTGACAGGGATAGAC 10669 28 100.0 32 ............................ ACTCCACATCCGGCGCTTGATTCACATCTACA 10729 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTCCGGGATTATGCTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTGCAACGCATTCCTATCAGCAAGGAACAACGCACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGTTTTTAACTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //