Array 1 83670-85094 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN265633.1 Porphyromonas cangingivalis strain COT-109 OH1379 scaffold10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================ ================== 83670 33 100.0 33 ................................. GGTGGTGGGGTGTTGGTAGGGTTTAGCACGCTC 83736 33 100.0 34 ................................. CTTTTATAAAAGCAAGCAAAGGTGATATACACAT 83803 33 100.0 34 ................................. CACTCGTCCGAGGGCATGGCGTACAATACCGGGG 83870 33 100.0 35 ................................. CTGATGGGCTACTATGCAGGTAAGTACTATGTCTA 83938 33 100.0 34 ................................. AGGAGATATAATTATGCGGACTATCTATCAAGAC 84005 33 100.0 35 ................................. TTGATCATGGTGAGCAAGCGATTGTAGATGATAGA 84073 33 100.0 34 ................................. AAGTTTGACATCAGCTTCGAGACCTCTATTTTGC 84140 33 100.0 33 ................................. AAATGCGAAGCAATTTAAGAACAACGATGCTGC 84206 33 100.0 34 ................................. ATCTTTATAATGTCAACAAAATCCTTTGCCAAAA 84273 33 100.0 34 ................................. ATTATACCTCGAAGTATCTCCAAAAATCTACATA 84340 33 100.0 34 ................................. TCTGAAAATCAACCGACTATATTATTTAACATCA 84407 33 100.0 80 ................................. TTGCTGTCTTGGCTCGCCATCGGCGTGGTCATCAGTCGCAGCGGGTACTCGTGTNGTCTCATCTCGGGCAAGTACGGTAA 84520 33 100.0 34 ................................. ATGATGGGGGCGGACGGATTGAAAGCCAAGATCG 84587 33 100.0 35 ................................. GGGCGTGTCGGGGATCCTCTGTGACATCCCCAACA 84655 33 100.0 35 ................................. ATCGCCGCCTTGGAGGTCTTGGAGATCACATCGCT 84723 33 100.0 35 ................................. GATACCGGATGCGGCCAGCAGAGAACCTCTTACTT 84791 33 100.0 35 ................................. AGCCTAAGGATTTTGGGCTTGATGTTGCGCAGTTA 84859 33 100.0 35 ................................. GATCGTGAGACTACTTCGGCTACTGCTTCGTTACC 84927 33 100.0 34 ................................. GGCCTATGCCGTATAACTCTGGACTAATAGTGTA 84994 33 100.0 35 ................................. GTCAACGCCAACGCTACGACCAAGCCGGGGTTGAT 85062 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================================================================ ================== 21 33 100.0 37 GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Left flank : GGTCTTCGAGTGCCTCGTAGATCCGGCTCAGTTTGCTGTTCTCAAACACCAACTCCTCGACACCATCAATGATGAAGAGGACAGCCTCCGCATCTATCAACTTGGAAAGAACTACCGCTCACATATAGAGATCTACGGCCGTGCCACATCCTTCGAGATAGAAGGAGAACTCATCATATAGCCTCGTACGTCTCCTACGCTCCCCTTAAGATAAACCTCCAACGGTAGTAAATACATAACAACAAGAGGAATCCCTCGGCATACAGACATATCTTCAGTCTCAACAATCAGATCACCTCACACAAACAAACCAACAACAAAAAAGTCCTCATCTGCGAACCAATAGTGCTCAGCAAAAAGCAGGCAAATTCGCACCCTCAGATAATCAGGATCTTAGATTGCTTGAGCATTATATTTAATCCACTATCGACTTCAGCGAAAAGCCTCTCGCAAATCAAGCCTTCAGAACCGATATAAAATCTATATCTTTGTGGCATACT # Right flank : TTGACAAGCAGAGAGATTTTGAGGGGCTGTCAAGTCGCAGC # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 4426-6207 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN265643.1 Porphyromonas cangingivalis strain COT-109 OH1379 scaffold7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 4426 33 100.0 35 ................................. TTTGAGCTTGGTACCAAGCCACGATACACCAAGGG 4494 33 100.0 36 ................................. TACAAACACACCTACGAAGACTTGGACAAGCTCGCC 4563 33 100.0 35 ................................. GCATGATCGAAGACCCACGTAATTTGACTCCATCA 4631 33 100.0 35 ................................. CCCGGCTGGCAAAAGGTCGAGGAGCATATCGAGAG 4699 33 100.0 35 ................................. AAGGGCGCGATCGGAGTCCTCGTTGATGTCGGCCA 4767 33 100.0 37 ................................. GTTAAACTTAAGAGTGACATCCGATAAAGTAGCTTGT 4837 33 100.0 35 ................................. AGAGATTGTTAAGTATGTGCTCTATCTCAATCAGT 4905 33 100.0 36 ................................. ACCTTATCATGATAAGGTAACATATCGGACTTGTCA 4974 33 100.0 33 ................................. ATAGTTTTACGGTTTTAATATCGTCATAAGTGC 5040 33 100.0 35 ................................. ATTATACCTCAAAGTATCTCCAAAAATCTACATAT 5108 33 100.0 33 ................................. CTGGCGATAAAATTAAGGTAAACACTCGTTACC 5174 33 100.0 34 ................................. ATAATGGGTCTCGTAAAGGTCAAATTATAGATGC 5241 33 100.0 33 ................................. GAGGCCTGCTCGCTTGAGGGCAATCATCTCTCG 5307 33 100.0 35 ................................. TGCGCCCTGACATCCTCGGTGGTGGGGGTGTAGGG 5375 33 100.0 35 ................................. ACAATCACTTGATTATCAGCAACGTAAGATATTAC 5443 33 100.0 32 ................................. CCCTTGCCATAAGACAAAGGCAGAGGGGTCGC 5508 33 100.0 33 ................................. GGCAAAAAACCAATAATATCAGTAAGCAGATGA 5574 33 100.0 34 ................................. TCGTCTGCACCCTCTATGTGGTGTGGACGATCAA 5641 33 100.0 33 ................................. CGAGCCATACTGAGTGGTAGGACGAGCAGAAGT 5707 33 100.0 34 ................................. CTTACTGAAAGTGGGCATAACCCGTGGGTCATTA 5774 33 100.0 33 ................................. TCGGTATTGCTTGCCGGTACATGGAACAGCAGT 5840 33 100.0 34 ................................. CGCCGACAGGAAGTAGCACAGACCCTAATTGGGT 5907 33 100.0 33 ................................. TCTTTAAGAAGTTCACGGACGAGGTTAGCAACA 5973 33 100.0 34 ................................. GAGTTTAACCGAGAAGCTTTGTATGCAATGGATT 6040 33 100.0 35 ................................. TTTTTCCGTGTTTTTTAATTGTTGAGTTCGAGGAG 6108 33 90.9 34 .............................CCC. CCCCTTTGGAAACGAAGTTACTTTGTTAATGAAT 6175 33 93.9 0 .................T.......G....... | ========== ====== ====== ====== ================================= ===================================== ================== 27 33 99.4 34 GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Left flank : CGTTAGGACTCGCCTTTGTCGCAGCCCATCCGGGCTGCGTGAATTGAAACATCACAACCGGAGTCATACAAAGCGAAAACGGACAGTCGCAGCCCATCCGGGCTGCGTGAATTGAAACAATGCAAAGCGTGACTTGGTTACTTACCTTTCGATGTCGCAGCCCATCCGGGCTGCGTGAATTGAAACGTCCATTGGAGACTCAGGATATCGGAGTATCTGACGTCGCAGCCCATCCGGGCTGCGTGAATTGAAACTCCCACTCAGATGGGACAAAGAGATTAACGATAGTCGCAGCCCATCCGGGCTGCGTGAATTGAAACTTGCTACTGAAAGTGAAGAAGTTTAACTCTTTTTAAGTCGCAGCCCATCCGGGCTGCGTGAATTGAAACATACCGACCTTGATAAGCCCAAGCGGACTCAGAAGGTCGCAGCCCATCCGGGCTGCGTGAATTGAAACTTTNAAACATACCGACCTTGATAAGCCCAAGCGGACTCAGAAG # Right flank : CAAAGTTTTATCGAAAAGAGGTAAGTTGATACGATGTCGCAGTCCGAATGGACTGCGACATCGTATTGTTTTATCTAAAATGCTGAGGCTCGGAGTTGAGAGATCGGGCGATAATCTTGTATGCCATTCGACCGAATACAATAAGATGCCTCGAAGGATATCTTGAAAGAGTCCGCATACACAATGAATGACTTTCAGGGGAGTGCGAAGACGAAAGTCTTGACACTCCCCTGAAGTTGTTGAGAGAGAGATGGTTGTCAAGAGAAGAACCGTCAGCTAATTTGCCCCTCCAACATCTTCAGATAAGTAGGCGATGAAGAGCGGAGCTGATCGTCTGTTCCGACAGCTTCGATGCAGCCGTTATTGAGGAGTATGATCTTGTCCGCACTGCGGATTGTCCTCATACGATGGGCAATGACGATGACGGTCTTGTTGCGGATCAGTTCCGAGAGCGCATCCTGGATGAGGGTTTCGTTCTCCACATCGAGGGATGCCGTAGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCCATCCGGGCTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //