Array 1 138655-137954 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHIH01000001.1 Escherichia coli strain EC_52 NODE_1_length_357239_cov_19.662845, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138654 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 138593 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 138532 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 138471 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 138410 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 138349 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 138288 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 138227 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 138166 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 138104 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 138043 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 137982 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156015-154156 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHIH01000001.1 Escherichia coli strain EC_52 NODE_1_length_357239_cov_19.662845, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156014 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 155953 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 155892 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 155831 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 155770 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 155709 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 155648 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 155587 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 155526 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 155465 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 155404 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 155343 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 155282 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 155221 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 155160 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 155099 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 155038 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 154977 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 154916 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 154855 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 154794 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 154733 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 154672 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 154611 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 154550 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 154489 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 154428 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 154367 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 154306 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 154245 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 154184 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //