Array 1 234038-234189 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPI01000009.1 Salmonella enterica subsp. salamae serovar 50:b:z6 strain BCW_1520 NODE_9_length_234480_cov_0.231806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 234038 29 100.0 32 ............................. ATTACCATCATTATAGTAAATATCGCAAACAT 234099 29 100.0 33 ............................. GATCTAGTACCAAAGAGCCGGTCTCCATCTCTT 234161 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATACCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCTCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GAGGTAAAATTCATGTTAGGCATTCTAATAGCGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCGTGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCTGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGAAAGTGATGGTGGTGGGGGAAGGATTATTCGTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108446-106648 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPI01000013.1 Salmonella enterica subsp. salamae serovar 50:b:z6 strain BCW_1520 NODE_13_length_170583_cov_0.245683, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108445 29 100.0 32 ............................. CATGGCAGCGCGGCAAGCGTTCCATATCTCCT 108384 29 96.6 32 ............................A GGTACGGTAACTCGCCAATCAGCGGCGCTGGC 108323 29 100.0 32 ............................. GATTGACGATCAGTCAGTTCAACATTCTGAAT 108262 29 100.0 32 ............................. CTTCCGCCAACGCCAGTATTCGCCCATGATGT 108201 29 100.0 32 ............................. GTCGATTTCGGCGCGGGTACCGTCAATGACAA 108140 29 100.0 32 ............................. GTCATTCTCAATCAGGTTATCGATCGCCGTCT 108079 29 100.0 32 ............................. GTCGCAGTATCGCAGATGACCATTATGCACAG 108018 29 100.0 32 ............................. TACGCTGTTGTGCATCTCACTGACGGCATTAT 107957 29 100.0 32 ............................. TCTTTTCGCTGGGTGCTGAAAACAACACAGAG 107896 29 100.0 32 ............................. TTTCTGTTTTACACCCTTTACCGAGGCGCAGA 107835 29 100.0 32 ............................. CTGTAACTGAACCATTCTCTGATTTTGTCCAT 107774 29 100.0 32 ............................. CGTCCTTAATGGCTGCCATCGTGTCAGGTACA 107713 29 100.0 32 ............................. GTTTCCGGAAAAGTGTGGATTCGACAGGCTGC 107652 29 100.0 32 ............................. GAACCGTAAACCCGGCATCACGGAGCGCAGTG 107591 29 100.0 32 ............................. AGATTTATCAACCTCTGCATAGGTTTCCAACA 107530 29 100.0 32 ............................. GAGCCGCGCGTGGCAGATCTCGATGATGGCTA 107469 29 100.0 32 ............................. GCTGCCGGAGAAATAGGGGGCTGGCAGAATGT 107408 29 100.0 32 ............................. ATATCCGCTTCCATGTCGATTGCCAGTTGGAC 107347 29 100.0 32 ............................. AGGCATTCCGCATCCGTAGCATTGTTTCAGGT 107286 29 100.0 32 ............................. AGTATTGAGGATGTCTCACCTGACGACCTGCG 107225 29 100.0 32 ............................. GCGTGGTCGGATCGTTTGTCTGCCGTTATCGA 107164 29 100.0 32 ............................. CTGATCCACGTCGCCCGCCGCGAGGCCGGGCT 107103 29 100.0 32 ............................. GGGTCGGCATCTGTGAAATCCTGTGGAATACC 107042 29 100.0 32 ............................. AATTCCGCAACATGCAGGACCACTACAGCGAT 106981 29 100.0 32 ............................. GAGGTTCCAGTCGAAAAAGTTGTCAGCGACAT 106920 29 100.0 32 ............................. GACGAATGCCGCGACCGCCGCCGCGATTGCCA 106859 29 100.0 32 ............................. GAGAGCGTGGAGCACCTCCTAAAATCGTTATG 106798 29 100.0 32 ............................. TGGCGCGCCAATCCGCCTTCGGTGCGTATCAC 106737 29 96.6 32 ............T................ AATACGCAAAGCTGATTTTGTCGAACAGTGCG 106676 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAGTGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127056-125744 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPI01000013.1 Salmonella enterica subsp. salamae serovar 50:b:z6 strain BCW_1520 NODE_13_length_170583_cov_0.245683, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 127055 29 100.0 32 ............................. CACGGCAGGCTGAGGGCTAACCCATGACCACT 126994 29 100.0 32 ............................. GCGGTGCGGCATGAGCAATACATTTTTTATCA 126933 29 100.0 32 ............................. GCGCGTACTTTCTCAACGTCTGCCCGGCTCAT 126872 29 100.0 32 ............................. CCGCCACGTTTGAAATCACTCAGGGCGGGAAA 126811 29 100.0 32 ............................. GCGCTGGGTCGTTTCCACCAGCTCAACGCTGA 126750 29 100.0 32 ............................. TTTTAGTTGAGCCATTTTGGTAGCTGCAATCC 126689 29 100.0 32 ............................. CGTTCGGATAGTCGAGTGAGTTCAATCAGCGC 126628 29 100.0 32 ............................. GCCGAAACTTAGCCCTGATACCGGACGATAAG 126567 29 100.0 32 ............................. CGCCCCCGGTTAGTTGTTCACTGCGCTGGAAA 126506 29 100.0 34 ............................. CGGCGTATCTGGGGCCGGACGGCACGCTGCCAGC 126443 29 100.0 32 ............................. AATTAATTTAATCACGCCAGCCTCACAATATA 126382 29 100.0 32 ............................. TTGACCACAACGAATACACAGGGAACGGCGTA 126321 29 100.0 32 ............................. GTAACGTTGCCGTTCTCTACGATATTGACCTG 126260 29 100.0 32 ............................. AGTTTTTACAATCAAATAGAATCCAATTTCAA 126199 29 100.0 32 ............................. CCGATTCACCAGTTCACGCTCTCGATCATGCA 126138 29 100.0 32 ............................. CTTTCCGGTAGAGCGGAATTGAGAATGCTTCA 126077 29 100.0 33 ............................. CTGGGTCTTGGTTTCGACGTTGTAGCGAATAGC 126015 29 100.0 32 ............................. AATGGCGGAAATAGACGCACGCGGACCCGGTA 125954 29 96.6 32 ............................C TCGGTCCATACAACCTCATTAGCGTTAGGATC 125893 29 100.0 32 ............................. AGATGGAAATCCAAAATGAACAATCACAGCAA 125832 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 125771 28 86.2 0 ....C........C..........G-... | ========== ====== ====== ====== ============================= ================================== ================== 22 29 99.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAATTAGTTTATAAACAATGATATACATTTAGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTCATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //