Array 1 285649-286408 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMV01000002.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 204 NODE_2_length_545993_cov_25.9664, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 285649 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 285710 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 285771 29 100.0 32 ............................. TCTTCAGAAATGATGAGTTTTTCCAGTCCGTC 285832 29 100.0 32 ............................. TGTCGGACAGTATCTGGTTGGCTATGGGGGGC 285893 29 100.0 32 ............................. GAATTAAACGTTACTGGCATGATACCGTTCGG 285954 29 100.0 32 ............................. GTTTCGCAGGTACGGTTAGTCCGGCCAATTCA 286015 29 100.0 32 ............................. GCGACGGCGTTTATCAGTGCGAACAGGACCAG 286076 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAGGATGAGC 286137 29 100.0 32 ............................. AATCAGAAACAAACAAGACTTACTGGATGTTG 286198 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 286259 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 286320 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 286381 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 302553-303966 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMV01000002.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 204 NODE_2_length_545993_cov_25.9664, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 302553 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 302614 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 302675 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 302736 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 302797 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 302858 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 302919 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 302980 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 303041 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 303102 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 303163 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 303224 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 303285 29 100.0 32 ............................. CCATCTTTTTCGCGCCTTGTTGGTCAGGCAAT 303346 29 96.6 32 ....A........................ CACATCTCCAAACTGGAACGCGCCAACGCTGC 303407 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 303468 29 100.0 73 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAAGTGTTCCCCGCGCCACCAACTCCTTGGGGGAAAACGGCTTG 303570 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 303631 29 100.0 32 ............................. GCTATTGTGATGCAGTCAATGCAATGGGGTAT 303692 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 303753 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 303814 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 303875 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 303937 29 86.2 0 TAA.........T................ | A [303961] ========== ====== ====== ====== ============================= ========================================================================= ================== 23 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //