Array 1 1295424-1294040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072503.1 Bifidobacterium dentium strain E7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1295423 36 100.0 28 .................................... GATAGTCGCGTAGGACTTTGATCTCGTC 1295359 36 100.0 28 .................................... GCAAGTGTCGGCGCCTGAGGGTGTGGAA 1295295 36 100.0 28 .................................... ACCTGACTATGCGGACGATGCCGGAATC 1295231 36 100.0 28 .................................... GCGCATCGACGCTCCAGTCGGCAAGATT 1295167 36 100.0 28 .................................... TTGCCTCGGCGGAGCCATTGGCTTATGA 1295103 36 100.0 28 .................................... ACTTCGACGGATTCAACGAGTACGCTTT 1295039 36 100.0 28 .................................... GTTGACAAGGCTCACGACACGTCGAATC 1294975 36 100.0 28 .................................... TGCACGATCTGCGGCATACTGCGGCTTC 1294911 36 100.0 28 .................................... CGTGGGATGGCGTCGTGGTTTTCAACCA 1294847 36 100.0 28 .................................... TGATGCACGTCGTGCCGCTCTCGGCAGT 1294783 36 100.0 29 .................................... ATGAATAGGTGCGACCGTCCTGCTCAAAA 1294718 36 100.0 28 .................................... CGTCAAACATTTGACGAAAGGGGTATGT 1294654 36 100.0 28 .................................... CTGTTCTTGCTTGGCATTGCCCTGCTCG 1294590 36 100.0 28 .................................... TCAAGTCATGCAGTATCCACTCGGTCTC 1294526 36 100.0 28 .................................... TGGTCGGGCAGCGTTCGGCGTCGCAGGA 1294462 36 100.0 28 .................................... CGAACGTGCGTCGGGTGGCGCTCATGAT 1294398 36 97.2 30 ........C........................... TGCATTCCACGCACACCTTATGCCCCCAGA 1294332 36 97.2 28 ........C........................... GGAGCCAACCTATGCCGTGCAACGTGAC 1294268 36 97.2 28 ........C........................... CCATGAGCGCCTTATAAATGAGCGCTTG 1294204 36 97.2 28 ........C........................... GCTTCGGTCACAACGATGTCACAACGAA 1294140 36 97.2 29 ........C........................... TGACGTGCATGTGGTGGTTTCCGACTTGG 1294075 36 97.2 0 ........C........................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.2 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGACATGGGCTACAGCATGGTGCAGTATTCCGTATACGCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGGCTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTAAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : ATGAATATGCGTCATCGTTCGGAAGGATGCGAGCACGATGAGGTTCATTCGACGCGAAGTGATATTACGGAAAAGAGGTTTCGGCTCACGATGCATACAGGTTCCGAATGTTTGATCATCGGCGCGCCCAAGCACGGCCATCTTGATTTCACCTATGGCCTGACGCAGGCCGGCAGAGAAGCGTTGATGCTGTCCGATTCCTGCGTGATGAAACTGTTCGACGTTTTCATTGGAGTATTGGACGAAGACGAAGGCTTGGAAAAGTCATGTCGGGGCAGGAAAGGCGTCTGAACAACCTCCGGAAGGTGCGGATAGACAATCCTTAAACAAAAGAAAATCCTGCAACCGCTGTGGAAGCCCTTTGGCTAACAGTCGTCTCGCAGGCACGATCGTCGGCATCTTCAAGGGACTGTTCGGCTGACCCAAGCGGAATATGAAGACGGATGAGTGACTTCAATGGCGACTTCATCGTGAAGTCGCCATGTTTATTGCCGGCCGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 1772338-1767301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072503.1 Bifidobacterium dentium strain E7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1772337 36 100.0 35 .................................... GGTCTAACACTACCGCAAAAAGCAATGCAAGTCGT 1772266 36 100.0 36 .................................... AACCACCACCGCATACGGAAGCATCTTCGAAAACCA 1772194 36 100.0 37 .................................... GCCTTCAGTAGAATCAGGTTTCATATCTTGCTGGCCG 1772121 36 100.0 38 .................................... CGCCATCAGGGATTATTGCGACTCCAATCTCGTATCGA 1772047 36 100.0 36 .................................... GCATTGGCCTCCGCACAAGGCGCAGACCCGGACCAG 1771975 36 100.0 34 .................................... TGTTTTGCATGATGGCTTTGATGATGCCGGTCAA 1771905 36 100.0 34 .................................... TGGACTCGTCCCACGAGCCCGGCGACATCGTCTT 1771835 36 100.0 38 .................................... CTTGCATACGTGTGGCTGATCTATCCTAGCTACATCCT 1771761 36 100.0 41 .................................... TGGCAATTGCGAAAGCACTTGATCTCACTGTTGCTGATCTT 1771684 36 100.0 38 .................................... CGTGGCGCTGACGTCGGTTATATCCCTATTATTTGCGC 1771610 36 100.0 38 .................................... GTCTTGGAACGGCGGCACTATTTCACGACTTTCTGCCA 1771536 36 100.0 38 .................................... GTCGCGCGCCTGCCAGCGGCTGCGTTCTCGATGAACCT 1771462 36 100.0 35 .................................... GGTGCGTGAAGGCAAGTATGGTACGGCTTCCGGTA 1771391 36 100.0 36 .................................... AGCGGTCGAATAGGTGCGTTGTTCCGCACCCGTCGT 1771319 36 100.0 35 .................................... TAGGGGTACGGCGAAGTGAGTTGGAGCGCTTACCT 1771248 36 100.0 35 .................................... CTGTGTTTGGGGTGATGGTCGAGCGCATACAGGAC 1771177 36 100.0 36 .................................... GACGGCCTGTATATGCAGGTCGAGCATGTGCAATAG 1771105 36 100.0 39 .................................... ATCACCGCCGACGTGATAGTCCAGCCGAGCGATTGCGCG 1771030 36 100.0 35 .................................... ATGCGCAAGACCAGCTCGACAAGCTTACCGGACAG 1770959 36 100.0 38 .................................... TATGGCGGTTCGAACAAAGGCTTGGCGTATCCGCTGTC 1770885 36 100.0 35 .................................... CCTGCGGTGAAGCGGCCGATGCTGGTGCGGCTCGC 1770814 36 100.0 40 .................................... GTGTGTCTGCAACTACACGTCGGCGTGGGTGTCGGAAAAC 1770738 36 100.0 36 .................................... CATGGCGAGGATGCCGATTCTCGCGCCGAAGGGCCT 1770666 36 100.0 34 .................................... CGTGGTCTTCCGCAAATCCGCTCCAGCCGAGCGT 1770596 36 100.0 36 .................................... TTCTTCATATCGGTCCACGAGTGCGCCATGTTTTCC 1770524 36 100.0 36 .................................... TTTCCAACCGCGCACGAATTGGTACACGTTTACGTC 1770452 36 100.0 38 .................................... GATACCGAGTCCTCGAGCATGATTTGCCGCAATTCGAT 1770378 36 100.0 37 .................................... AGCACCCGGTACGAAATGGTCACGCATCGCGCCTCAT 1770305 36 100.0 36 .................................... CGGAAGAATACGACACCCTTTTCAGCGGCATGACCC 1770233 36 100.0 37 .................................... TGGCGGTGCCGGTGGTGCCGTCGAGCTTGCGGAAACT 1770160 36 100.0 36 .................................... GAGTCCCCGTTATGACATCGGCACGGTTTTCGACGT 1770088 36 100.0 38 .................................... CCGCGTACGTCCTGCCGTAGGTTCGATTCCATCACCTC 1770014 36 100.0 36 .................................... GCCGTGCACGAAAACAGTCTGCCGATCGACCTGCGT 1769942 36 100.0 38 .................................... TGCGTACAGCCGTCGCCAATGAGGGCGGCCTAAATCAG 1769868 36 100.0 37 .................................... ACGGTCAGCGAGCTCGCCGAACGATTGAGATCCGGCA 1769795 36 100.0 35 .................................... AACGCATTCAAAATCTATCCTAATGCGCGATATTG 1769724 36 100.0 36 .................................... CTCCGCCCGCTCCCGACGAAACTCCTCCTCATCCTG 1769652 36 100.0 36 .................................... GGTCTGTGAGTAGCCCATGTTCGCGGTCTGACACCA 1769580 36 100.0 35 .................................... CGGCCCGCGTATTTCTTGAATTCCGCGTCGTCCGC 1769509 36 100.0 36 .................................... GTTGCGGCACGTCGGTCATGTTGTCGCCACTGCCCC 1769437 36 100.0 37 .................................... TCGCGAACGGATTCGGAGTGATGCTTCCGCGATGCTT 1769364 36 100.0 35 .................................... GTGTAGAGCGGCAGTGAGAGATGCCGTGTCCTCTC 1769293 36 100.0 39 .................................... TTGCGCGTAGGCGTTGTTGATGCCCATCTGCGTTTTCTG 1769218 36 100.0 36 .................................... CTGGACTTGGGCATTGATGCCCGCGATCACGTTCGC 1769146 36 100.0 35 .................................... GTTCAGCGTGTCCGTGAACCATGCGATCAGTGTCA 1769075 36 100.0 36 .................................... TGCTTGTGTCATTGTTGGTTCCTTTCTATTTCCCTA 1769003 36 100.0 39 .................................... GTGAACCTTGGCCTTGACTTCACGTGACATAAAATCCTT 1768928 36 100.0 38 .................................... CATGTCGAGCTTCTCAGATACAGCTCGTGAACCTTCCA 1768854 36 100.0 37 .................................... AGCCATAACATCACTTGATAGCAAGCCCTTATTATTG 1768781 36 100.0 36 .................................... ATGCGCCGACTGGCTCAACAACCGCGACATGGTCCA 1768709 36 100.0 36 .................................... ACCCTCCAAAACGAAGGCTACGGCACCTACGGCCAA 1768637 36 100.0 37 .................................... TTCCACACGTCTTCTGCTGACATGTCGTCTCCTTTTA 1768564 36 100.0 36 .................................... GATGCAATCCAATCAGGCTCGTAGGCCGGTCGTGGA 1768492 36 100.0 35 .................................... AATTTCGCACGGTATGATTCGTCGAAGATCGGATA 1768421 36 100.0 35 .................................... CCCAGGGTCTTGTACACGACGTGCCAGTCATCCGT 1768350 36 100.0 37 .................................... GTAGCCTCGTGTCGAGGTGAGGCGATTCAAGCCGTAC 1768277 36 100.0 34 .................................... TACTTGACCGGAATTATGCGCGCATCATCTGGGC 1768207 36 100.0 35 .................................... GAGGATCATCAGGACCGGTATTTCCTGGTCTCCTT 1768136 36 100.0 35 .................................... CCCGACTTTATCGGTACTGCGGAAATCCCTGTCTC 1768065 36 100.0 34 .................................... TGCGTGATTCGTTCTCGAACGTGGGCGAATATTC 1767995 36 100.0 36 .................................... CATACCCAATTCGTGTGAAGATTTCGTGAGTAACGC 1767923 36 100.0 38 .................................... AGGTGCCCACGAGCACAGAACCCGCGCTTGGACTGCAA 1767849 36 100.0 38 .................................... CGCATAGGGCCTGCACGTATCCATCGCGATAGTCGCTC 1767775 36 100.0 38 .................................... GAGTTCACGGGGGTGCTGATCCAGCGTCTCATCGGCCT 1767701 36 100.0 40 .................................... CCGTCAACAATGGGTCCGCCCTTGCTCTCTCGAACAGCGC 1767625 36 100.0 37 .................................... TGGAATGATGCGATACGGCACATTGGCCTTGTCGATG 1767552 36 100.0 36 .................................... CCATTTCATCCGTTGTTCCGCGGAATACACGTCCCA 1767480 36 100.0 36 .................................... ATCCCAGCCGGAAAGAATGCAGCCGTCGGTATTCGC 1767408 36 100.0 36 .................................... AGGGTGATAAGATTGTAATTACCGCTCGTTCCACGT 1767336 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 70 36 100.0 36 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : GCTGGCGTGCGAGAGGGGCATGCCGGTGAGGTTCTTCACCGCGTCGTCGCTGGTGATGCGGCTGCGGCGCGCGAGGGACGAGAACCGGCTCGACGCGGAACTGCGCGCGATAGGCCGTGCCAGGCTGCTGGTCATCGACGAGCTGGGCTACCTGCCCATCGACATCGACGGGGCCAGGCTCCTGTTCCAGGTCGTCGCGGATTCCTACGAGAAACGGAGCGTGGTGTTCACCACGAACCTGGAGTTCGGGCGGTGGGGCGAGGTTTTCGGCGACGGCGACATGGCCGCCGCGGTCATCGACCGTATCGTGCACCACGGCAGGATCGTCAGGTTCCGTGGCGAGTCGTACCGCAACAGCCACTCCCTGATGAGATAACCGAAAACGAGAGGAACCATCCGGATTACCGGTGACGGTGTCCATTTTGAACGCCGATGGTGTTCAGATTAACTGGTGACGACACGCGGATTTATTTGACGAAAGACAGCCATGATTTACCGCC # Right flank : AGTCTTAGTGTAGAGCGTTGTGGTGACATGTATCTCAAGCAATTATGCGAGCGATGTACTTCATACCCTATGAAAAATGCGAATCTGGGAACGCTGAATCCCACAGAAACGCCATTTTCCGCATGCGAGCGCTTGCCGCGCGTCTCAGAAGTGATTCACCTCTCGTGCGCATGCAAGACGAAACACTCTTTAGTTATCAAACAGCCCAGCCGTTTTGACTGAAATCAAATAATTGTGGGAATTTCTAAGTCTGCATATCCTCGATGCCCCAGAAAATCCAATCCCTCTTCCGTCTGCGCAATTGTCCCCAATGAGCAGAACACAACAGAATCGGTTCCATAGTCAATCTCTTTCTCAATCTTCATACGTACGTTGAGCATCATTGAGGGGCGCACTTGCAACAGAAAAACACTGTATTGCAGCCGTTCTCCATAATGCTGAAGAATCTTCGCTACATGACTGCGACGGTAATCATCGCTCACATCATATGCAACTAAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1775676-1774910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072503.1 Bifidobacterium dentium strain E7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1775675 36 100.0 37 .................................... GCAAATACGAGGACAGCAAGAACGCTCTGCGAGACAT 1775602 36 100.0 38 .................................... GTGATGCCGTACTCCTTGCCGCCGGTCACGTAGTGCAG 1775528 36 100.0 36 .................................... CTCAGGGACAATCTCGACCGGGCGGGCATGCCGTCC 1775456 36 100.0 38 .................................... TTTCCGGCATGGAATTGCACCACGTCATGGATGAGTAG 1775382 36 100.0 38 .................................... ATGAAACGCCCATGCATGCCAAAACGAAAAGGTTTATA 1775308 36 100.0 35 .................................... AAAAGCCTGAAATCGACCCTCTTTTCCACTGACAA 1775237 36 100.0 35 .................................... CCCATGTTCACATTCGGGTCGTTTGTCGTACCTAT 1775166 36 100.0 37 .................................... ATACCGAGTCTTCGAGCATGATTTGCCGCAGTTCGAC 1775093 36 100.0 38 .................................... AACACCGCAAGCTGGTTATTATAGGCTTGACCGCGCAC 1775019 36 100.0 38 .................................... TGCACCAGCTCGTGCACGAGGGTACAGCGCTTGCCCGT 1774945 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 100.0 37 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : CAACCCGCCCTTTCGGTTTTTATTCTGTGTAAATAACTCCCTTCGCCTACAGTTCAATTTGGCGTCATTTTTCTCTGATCTTGTCTGAAAAGGATGTTTGCCGTTGTCTTTCAGGTTTTGCAAAAAGCTGGTTTTCTTCCAACGATTTACGATTGCCATGTTGGAGTGCGGATCAACTGTAGCCTTCGGAAGTTGACGCTCTTCTGCTTCGGATGCGTATAGTAATCCTACATTTCTATTCATTTAATTAAGTCATAGAAGCGACGATGGATTTGCCTTCTGGGACAAAAGGTATAGGATAAGGAAACGTAAAGGAAGAAGGGTCTCTGGCGGATTTGCAGATTCGCCAGAGACCTGCGAAACGGAAAGAAGGTGATAAGGCATCATGGCCGCCGCCCGCTTTCTGGCTCGTATTTCTAAGGCATAGAAACATGAGCCAGTATAGCAGGCGGAAAAGAGAAACGCGGTGTTCGTCTTTTCGCCGCAAAGCCGCTACCGCG # Right flank : CCGGATTGATTTCGACGTGCTGGGCCATGATGTTTATGGTCAAATAAACGTGTACGGCGTCACCACCAAATCTGAACGGTGTGAGCGTTCATATCGGACACGGTCGGCGGCTGGAAACGGCATCGGCGGAAGAGAAGCGCCGGTGCCGTACGGTTCCTGATAGATTCCCGAGTGCTAACAACCAACACATGGTCCTCGGGAGGAAAGGAATGACGACACCGGTGCGTGTTCAACAGAGTATCAGGCAGCTCGAGACGAAAGGCCTGACGCATGCCCAGATAGCAAGGGAACTGGGGGTCTCGCGGACGACCGTGGTCAAATACGCTTCCCGCGACTATTCCCCGGTTCCCGCGGCGGGGAGGGAGGGAAGCCGGTCGCTGGTCGTGGGCAGGTACGCGCGCAAGGCCGACGAATGGCTCGAGGCGGACCGGCGCATGCCGCGCAAGCAGCGGCATACCGCCCGGCGCGTGCACGAACGGCTTGTGGAGGAATGCGGCTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //