Array 1 4652969-4655426 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018365.1 Streptomyces sp. SN-593 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4652969 29 100.0 33 ............................. TCATCCTCGCCGCTGGAATTCAACGGGTTGTCA 4653031 29 100.0 32 ............................. AGCATCCAACCGGAGATTGACGCGCTGGAACA 4653092 29 100.0 32 ............................. GCACCAGCGAGGGCGGCGCCGAGCGCGCCGAG 4653153 29 100.0 32 ............................. GCCGACAGGAGTGCGGTGCCCGAGGGGCCCAT 4653214 29 100.0 32 ............................. GCGTCCCCCACGGCACGGATGATGGATGCGCT 4653275 29 100.0 32 ............................. GTGGTGACGGGCGGCCTCGCGTCGCCGACGGA 4653336 29 100.0 32 ............................. TCCGGTCGGCTCATCTGGAATTCGTCCTCGCG 4653397 29 100.0 32 ............................. GCCCCTCAAGGGGCTGCCGGTCAAGGATCGGC 4653458 29 100.0 32 ............................. GTGCAGGCCAAGTTGCGCGGCTCGTTCGAGGA 4653519 29 96.6 32 .T........................... CCGCCGGACCCGTCTCCCTTCTGCGTCACCGA 4653580 29 96.6 32 .T........................... GCCACAAGGCCCCGCGCCACCACGGCGCGGGG 4653641 29 96.6 32 .T........................... ACGGTGTACAACCGCGGGTTGGTCGGCGTCTG 4653702 29 96.6 32 .T........................... AGCGACATCGCGAAGGACGGCGCACACGGCGA 4653763 29 96.6 31 .T........................... AAGCTGCTGCGCGCGGACGTGCACGCGGGTG 4653824 29 100.0 31 ............................. CCGTCCAGCCTGCCCCCGGCGAGATCGGCTG 4653885 29 100.0 31 ............................. GTCTCGCCCCACGGGATCGACGGCGTGCCGT 4653946 29 100.0 32 ............................. GCCACAAGGCCCCGCGCCACCACGGCGCGGGG 4654007 29 96.6 32 .T........................... GTCAGCGACATCAACGCGTTGTGCTGGCTGTT 4654068 29 93.1 32 .T..........G................ GCCGATCGGCACCGACCCCGACTCCGACGGGG 4654129 29 96.6 32 .T........................... GTATGTTCGAATCTCGCGCAGCGATTCTAGCC 4654190 29 100.0 32 ............................. TTGTTGCCCGGCTTGAAGGCGGCGACGACGTA 4654251 29 100.0 32 ............................. AGGTGGGTCATGTGCGCCCCGTGTGGCTCCCG 4654312 29 100.0 32 ............................. ACGTCGTCCAGCGCGACGGCCTCGCCGTTCAG 4654373 29 100.0 32 ............................. GCACCAGCGAGGGCGGCGCCGAGCGCGCCGAG 4654434 29 100.0 32 ............................. CTGGGCACCGCGTCGGCGTCCTCCTGTACGGC 4654495 29 100.0 32 ............................. AGCGCGTTGTCCGCCACGGCCTGGTTGAGTAC 4654556 29 100.0 32 ............................. GACATCGTGATCCGCGGAACCTTCCAGGGCCT 4654617 29 100.0 32 ............................. ACCGAGCCGCCGGGGCTGTTGACCCTGACGCG 4654678 29 100.0 32 ............................. ACCGGCTCCACGCCGGCGCGCACCGCGGCGGC 4654739 29 100.0 32 ............................. TCGGTCTGCGCGCGGCGGGCGAAGTCTCCGGG 4654800 28 96.6 32 .................-........... CGGGCCACCACGAACTGGGTCCGCCTCGAACG 4654860 29 100.0 32 ............................. CGGCCCCCGCTCGCCGTCACCATCGCGGCACT 4654921 29 100.0 32 ............................. ACGCCACCGCCCCGTCACCGTGCTGGTGGCGG 4654982 29 100.0 32 ............................. AGCTCGTTGCCCTCATGGAGGGTGTCGACGAG 4655043 29 100.0 31 ............................. ACACCTGCCGGGACCTCGTCGGCGGCCACGC 4655104 29 100.0 32 ............................. GTCAGCCTGCGGAAGGGGTCGTTCGGGCCGGT 4655165 28 89.7 31 .T..-....................T... CACCAGGAGGGGAAGGCATGAAACTCCAGCT 4655225 29 100.0 31 ............................. GGGACACCGGGCTGAACTCGGGTCAGCACCA 4655286 29 100.0 18 ............................. ACGCAGCAGGCCAACCCG Deletion [4655338] 4655333 29 93.1 32 ...T......T.................. ACGGAGCGCGATTGATAGATCTCGTCGGTCCG AAC [4655339] 4655397 29 75.9 0 .T.T....A..A.........C....T.A | C [4655413] ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.2 32 CCGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : GTGTCCGCCCGCCGGAATTCCTCGCCTAATGGCACGCCAATGGCGCGCGGCACCGTAATTGGTCTGGACAACGACAAAGCCCCAACTCGCTGAGCTGGGGCTTTCTTGTGGAGCGGATGACGGGAATCGAACCCGCGCTCTGAGCTTGGGAATCACGGGTGCTCGGCCGGCGCCTATGCCGGTCGGGTGGCCCGCTGGCCGTCCGGTGCTTCATGTCCGGAGGGGTGGGGTCTGGCTGTGGGCGCCCGCGGTATACCGCTGGAACTGGTGCGGCAGTGGTGCGGGGTGACGCTCGCGCCCTTGCGGTCGTGGAGCCGGAACGTCGAACCGGCGCGTTTGCTGCTTGCGTGGTGGCCGGAGGTGATCAGCCGTCGCGCGACCGTATTCTGTGCGGTGGGGAGTTGGTGGGTGCGCGCTCCCTTTCGGTGCCCCAAATGTCGCTTTCTCTGCAGTTGGCTCAGGGCAGTTCCGTCCGCCCGAAAACCCGCAGGTCAGTAAGA # Right flank : AACTCCACCGGTCCGGACGCGAGTCCAGACCTTTCAGCTGTCTGAGCCCCACTCGTGGTACAGCGCGCTTCGGGCAGTTGCGAGGGCGGCGGAGAGTCTGTCGGCGGCGCGGGTCTGCTCTCCCGCCTTGGTGAAAAGCGGCTGATATCCGCTGGTGTGGGCGCCAGCCGCTCCGATGCTCCGCAAGGCGGCCTCCGCTGGCAGCAGATGCCGCAGTACTTCGCTCATGGACCGCGCGACCTCGTTGAGGGCCGTTGGCAGCCTGCCCGGGGCAAACTCGGCGTACTGCTCGGCGGCTTTGCTCAGCCGGACCAGTTCGGCGGTCTCCGTGTCGTCCTCATGCAACCGCAAACGCTGCGCCTCGTACGCCACCCTCGCCGTAGACACGAGTAGATCGTCGATGCGCCGATAGTGCGCGGTCCACGCCGCTCGGTTGGCCACACGCCGCTCGCGCAGTTCCACCTCCATAAGGAGCCGCGCCTCGTGCGCCCGGCGGTCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4666552-4669021 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018365.1 Streptomyces sp. SN-593 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4666552 29 100.0 32 ............................. CGTGTCTCGTGTGCGCGTCCGTAGCCGCGTTG 4666613 29 100.0 32 ............................. ACCAATTTCTGGCCGCCGTGATGCCAGAACTT 4666674 29 100.0 31 ............................. CCCCGAGAACCCGACTCCGCTGCTCAGCAAG 4666734 29 96.6 32 ............................A AGACCGCGCACCGGACGACGAAGCTGGACCAG 4666795 29 100.0 32 ............................. GTGGTTGGGAAGCCCGTAGCACAGCACAGCGG 4666856 29 100.0 32 ............................. ACGTCCGCGGCCGCGAAGCGCCGGGCTGATGC 4666917 29 100.0 32 ............................. GGGCACATCGTCAAGTCGCCCGTCCTGTCCGC 4666978 29 100.0 32 ............................. GGCTTCGCCGACGGCGAGTGCACGATCAACCC 4667039 29 100.0 32 ............................. ACCGTCAGCACGGTGTCCGTCAGGCCCGCGGC 4667100 29 100.0 32 ............................. GCGTTTGGGAGCGTTCTTGACGTCGGCTACGA 4667161 29 100.0 32 ............................. GTCGACCAGGCGTCCCGAAGCTCGCTCACGAG 4667222 29 100.0 32 ............................. ATGTGTACCCCCTGGGATGGTTGAGGACTACA 4667283 29 100.0 32 ............................. GCTGTCGTACAGGGCATCGTCACCTATTCGGG 4667344 29 93.1 32 ...........................AT CCTCGCCAACTTCGCCCTGGAGGCGGTCACGG 4667405 29 100.0 32 ............................. AGGGTGCCGGGTTCGCCGCGGTCGACGTGGAC 4667466 29 100.0 32 ............................. ACGGTGTACAACCACGGGATTGTGTCGGTCTG 4667527 29 100.0 32 ............................. GTCCGCTTCTTGACCGAGGCGATCGTCCGCCA 4667588 29 100.0 32 ............................. GCCCCGAACGACAACATCAAGATCAGCGGTGT 4667649 29 100.0 32 ............................. GACTGGAACGGCGGCGTCTGCGGAGCCTGCCA 4667710 29 100.0 32 ............................. AGAGAGTAGGAGCAGACGATGAGCCTGTTCGG 4667771 29 100.0 32 ............................. GCCAACGCGGCGAGCACGTACAAGCTGCGGCT 4667832 29 100.0 32 ............................. GAGGCATCTTCTGATGACCGACGACTACCAGG 4667893 29 100.0 32 ............................. GCGGCGAAGATGCGGGCCCACCCATGCAACCA 4667954 29 100.0 32 ............................. AGGGTGCCGGGTTCGCCGCGGTCGACGTGGAC 4668015 29 100.0 32 ............................. ACGGTGTACAACCACGGGATTGTGTCGGTCTG 4668076 29 100.0 32 ............................. GATCAACGGAAGCGGTGCGGGCTGCGACGGGG 4668137 29 100.0 32 ............................. AACTACAAGGCGATCGAACTGTTCGGCGACCG 4668198 29 100.0 32 ............................. GGGCCGGGGCCTACTGGGACGCCTTCCGTACT 4668259 29 100.0 32 ............................. GGACCTTCCAGCGTGCGGTGTTCGAGTCTGCA 4668320 29 96.6 32 ...................T......... CCGGCATACATCGGATACCAGACGCCTGGCTG 4668381 29 100.0 32 ............................. CTGCCTGACCGCTATCGGACGGGGAGAGCAAT 4668442 29 100.0 33 ............................. TGGCGCGTCTGCGTCATCATCCAGCCGACCAGG 4668504 29 100.0 32 ............................. AACGTCATCTGGAATCAGGCCGGCTTCCCGGA 4668565 29 100.0 32 ............................. CCGACCGCGAGCGCGACACCGGCCTGGGCCAG 4668626 29 100.0 32 ............................. ACAGTCACCAACACGAGCCGTTACGTGTGCCA 4668687 29 100.0 32 ............................. CGCAGCATCGCCGCGGACGCGAAGAAGAGCTT 4668748 29 100.0 32 ............................. CGCAGCATCGCCGCGGACGCGAAGAAGAGCTT 4668809 29 100.0 31 ............................. TACGAATCCGCCTACCATGGCGTGGTTACTG 4668869 29 82.8 32 ......T........A..AA........A GAGGCGTTCAAGGACGGCGGGTCTACGGCGCA T,A [4668871,4668887] 4668932 29 86.2 31 .T...........T..........AG... TACTGCAAGGCGCCGAACTAGCCCAAGCAAC 4668992 29 89.7 0 .............T...........G.T. | T [4668994] ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.7 32 CCGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : CCGGATGGCTCGTCGCCCTCTAGCGGCTGGAGCAAGGCGTCCAAACGCCGCCGCTTCGGGAATCGCGCGCCGTAGTTCCATGGAGCGGTCAGTGTCGCGCCGTCAGGCGCAGCTTCCGCGAGCCCGTACCGCCAGGGGCTGTGGGAGCGGCTCTTCTGCGGATTGCCGACCCGCCGGGGGAGAAACCCACTTGACGGGGCGGCAGCTCGACGAGATCTTCCAACTGCCGTGAGACTCCACCAGCCTGCCGCCCATGGGCTCTGAACCGTGCCACCTGCGTACGGGTGCTCGTCTCGATCCCACCGTGACGGTGTGCGCAGCGGCCCGGGATCACGCGCAGCGCGAAGTCTCGGTGGCCGCGCCAGGAATGCCCACAGGGCGTCCGCGTAACCTGTCATGCGGAAAGCTGGGGCACGCGAGGTGCTTTTTGTCTTGTATGTTCTTTTCCCTCATCCTTGCTGAAACAAGCGCTGCTCCTTGATAAAACCGCAGCTCAGGAA # Right flank : CGCCCCCGCGTCAGGTGCTCCATCCGGCCTGCGGCACATTCCGCTCACGCGGACAGCCCACGACCGGTTCAGGGTGAGGGCATCCGGCCACTGCCTCTTCGGCTGTGTTGCGATGCTAAAACGCGCCCATGCATGTGATGACGGCCATTGCAGTTTGCTCTGCCTGTGGGCCTGGGGCACGGCAAGGCTGCCTTGCCTGGCCAGCAACAGTCACGGAGGAAGCTGGGAGCCTTTCAGTAGTTCGTTACTTCATCTGGGGTGAAGCGTTACCAGTGCAGACGCCCGCCAGGGGCGTCCGAGCGGAATTTGTGAGGCTGTCTGTGCAAGAGGACGATGAGGAACGCGGCGCAGAGTGGTGGCGGCAGCCAGCCTGGTGGCAGGTCTGGATCGCCGCGGTTGGCGTTGCTTGCGCTGTGATCAGCGTGATGCGCTGATACATCCACGCAGCTGGTGCGGATTGGCTCTGTACGAGGTGTCCCATCCGACTCCGGAGCGCAGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4678017-4680856 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018365.1 Streptomyces sp. SN-593 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4678017 29 100.0 32 ............................. CAGAAGTTTCACATCGGATTCGTCGCTCCGGA 4678078 29 100.0 32 ............................. AGTATGAGGGACGCCGGAGAGGAACCCGGAGG 4678139 29 100.0 32 ............................. AGCCCCCGGCGGCGCCGCCGCTCAGCCCCCGC 4678200 29 100.0 32 ............................. CACCCCCCACGGGCCAACTTCGTTCAGGAGCT 4678261 29 100.0 32 ............................. TCCCGACCACCGGTCGACGGACCCGGCCGTGT 4678322 29 100.0 33 ............................. TGGGCCACGGCGGACCGTGCGGTCCGCCGTGGA 4678384 29 100.0 33 ............................. GACATCGTGATCCGCGGAACGTTCCAGGGGTTG 4678446 29 100.0 32 ............................. TGGATCATGTTCACTTGCCTTTCGGAGGGGAG 4678507 29 100.0 32 ............................. GCTTCCCGGAACGCCGGAAGCGGCGTCCGGGG 4678568 29 100.0 32 ............................. GGGGCCGGGTGTCTCACCACCCGGCCCCGCCA 4678629 29 100.0 32 ............................. CGGCCGCGCCGATGATCAGGGTGGCGGTGTGC 4678690 29 100.0 32 ............................. TCCCCGCCGCCGTCGGCGCCCACGCCCTGTGG 4678751 29 100.0 32 ............................. GCCATGTACCGGGCGGGCGCGCAGCACGACAT 4678812 29 100.0 32 ............................. GGCAGCAACTCCCACACCGTGGTCATTGGTGA 4678873 29 100.0 32 ............................. TCCTCGACCGGCTCGCGGGAGAGGGGCGCGTG 4678934 29 96.6 32 ...........C................. GCGAGGCCCAGGCCAAGGCCGCGGCGTCCCAG 4678995 29 100.0 32 ............................. GAGATGATCCGCGGCACGACGAGCATGCCGAG 4679056 29 100.0 32 ............................. CACGAGACCGTTCGGAAGGCCGTCGTTCGCAT 4679117 29 100.0 32 ............................. ACCCGGGCCTCGGCGGTCAGGTGCTGCTCGGT 4679178 29 100.0 32 ............................. CGGGTCCGCGACAAGATCACACGGGTGATCCG 4679239 29 96.6 32 ..............A.............. TACCTCCGCGGCGGAACCGGCCAGGTCCGGGA 4679300 29 100.0 32 ............................. TTGCGGCCCATGGGTCAGCCCTTCTGGGCGGC 4679361 29 100.0 32 ............................. CCGTCGAGCCGCGAGGACGACTGGCTGGACGC 4679422 29 100.0 32 ............................. GACGCCCCCGTGACGCTCGCTGTGCTCGAGGA 4679483 29 100.0 32 ............................. GCTACCGTACGTGCGGTATTCCGGATAACCCT 4679544 29 96.6 32 ............................T TGCTACCCCAGCGATCACAGCCAAGGGCTTCC 4679605 29 100.0 32 ............................. CTCGTGGCCAACCCCAGTTTCGAGGCCGACGG 4679666 29 100.0 32 ............................. CACACACGCTTGACGATCCACACCACCAGGCC 4679727 29 100.0 32 ............................. ACCAGCGCCGTGAGGATCAGACGTCGGTCCGA 4679788 29 100.0 34 ............................. CAGCGCGGGCCGATGGTGATCGAGCGGGACCGGC 4679851 29 100.0 32 ............................. GCCACCAGGACCACCCCGCCCGCCCAAGCCGG 4679912 29 100.0 32 ............................. AGGTCGGTGACCGGCCAGTTCCACACCGGGGC 4679973 29 100.0 32 ............................. GGGTACTCGGGCGAGGTGATGTGGAACATCGG 4680034 29 100.0 32 ............................. GCGTGGAGGGTGCCGTCCGCCGTGCCGGAGAC 4680095 29 100.0 32 ............................. AGGCGCTGGCCGTCGTCGTCGACCAGCGACAT 4680156 29 100.0 32 ............................. CCCACCCCGTGGCACTACCGGCAGATCGACGT 4680217 29 96.6 32 .................A........... CACGTCACGACGCACCCCCGGCCAGCGTCAGC 4680278 29 100.0 32 ............................. GTCATCGCAGTCGCCGACGGCGTCCTCGTTCC 4680339 29 100.0 32 ............................. GGGGCGTACTGCCCGTCCAGCGCCTCGACGTC 4680400 29 100.0 32 ............................. AGGGCTGCGGCCAGTCGGGACTTGCCGGACCC 4680461 29 100.0 33 ............................. ACGCTGTCCCCGCCACGCGGGGTGTCGCCCCCA 4680523 29 100.0 32 ............................. AGTACCCAGCCCGAGACGATCGGCGGTCAGGT 4680584 29 96.6 32 ....................A........ GAGGAGATGACGACCTCGTGGGAGCGGCGCCC 4680645 29 100.0 32 ............................. GCGTGCGTCACGAGCCCGTGCCCCACCACCAG 4680706 29 100.0 32 ............................. GCGAGGCCGGAGCAGGCGACGATGGCGGCGCC 4680767 29 89.7 32 .C.....T......T.............. TACGCGATGAAGTACTTGGGCCCGACGGCCCA 4680828 29 86.2 0 ........T..A..............TT. | ========== ====== ====== ====== ============================= ================================== ================== 47 29 99.1 32 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : GCTGGGACAACGCCCTGGCGGAGTCGTTCTTCTCGACGTTGAAGAACGAACTGCTCAGCCGGCAATCCTGGCCCACCAGAGCAGCCGCCCACACTGCGATCTTCGAATGGATCGAGAGCTGGTACAACTTGTACCGTCTGCACAGCAGCCTCGGATACCGCAGTCCCGCCGACTACGAGACCACTCTCGCAGCCTGACCAGCGCACAGAAGCTGTCTGTCAAAGCGGAGCAAGCCCAGGGCCAGGTCTGGAGTTCGTCGGGTCGCGTCCCTGGAAGTGGTTCGGCGCGATGCTTACGGGTTGCAGTCGTGGAGCCGCTGAGTCGAGCCGGCACGTTTGCTGCTTTGCGTGGTGGCCGAGAGCGGTAAGACTTCGCGCGGCCGTACGCTGTGCGGTGGGGAGTCGACGGCACCTCTCGTCCATTCGATGCCCTAAATGTCGCTTTCTCTGAAGTTGGTTCAGGGCAGCTTGGCCCTCTAGGAAACCCGCAGGTCAGTCAGA # Right flank : CGCGTGGGCAGGCTGACATCGATGCAGGCTGTGAGTGTGCTGGCCAGTGTATTTTGCGCGTTGCCGCAACGCTCTTGTTGTTACTCGGTACGGTCGTCGGCCCGTAGGGCGTTTGCCTGGTTTCGCTCGAAGATCGCACTTCGAGCTGCTGAGGCGAGGTGACTCTGTGCACGGAGGGAGAGGCCGAGGCGGTTCCAGTGGAAGATCACGTGGAGGCTGAGGATGTGGCGGAGGCCGCGGCCGAGTGTTCCGTGGTCGGCCGCCTCGCGCAGGCTGCGGCCAGCGTTTTGAAAGGCTGTCGCCCATTCTTCGAACTGTCCGAGCGGGCCGCCGCGTGCGAAGAGGGCACTGGTGTCGGCCAAGAGCAGCGTGCGGATCTGCTGTACACGGTTGGTTAGGGCATCCGGCGCCAGGCCGGTGAAGTCGGCGCGGTGTTCGGCGGTGATGACGCGGTTCCAGACGTCGCCGGTCTCGTACCACTCCAGGCCGGCGCTGCGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4693295-4694604 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018365.1 Streptomyces sp. SN-593 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4693295 29 100.0 32 ............................. GGAGAGTAGGACCAGACGATGAGCCTGTTCGG 4693356 29 96.6 32 ............................G CCTCGCCCCGGGACCCCGCGACGATCGCGGCG 4693417 29 100.0 32 ............................. TCCGCCGCGTGACCCCCGGCTCAGCGCTCGGG 4693478 29 100.0 32 ............................. GGCCGGGTGTAGGAGCCCGGCCGATCCAGTGG 4693539 29 100.0 32 ............................. AAGATCGGTAGCGACAGCAAGTCGGCGGGTCG 4693600 29 100.0 32 ............................. GGCCAGCTTGCGCGAGGCGGTCATCGGACGAC 4693661 29 100.0 32 ............................. GGTACGACGCCGACACCCACACCCTGCACCTG 4693722 29 100.0 32 ............................. AGCGCGGCTGACCTGTAGAGGAGCATCACCAT 4693783 29 100.0 32 ............................. GACGGTGCAGCGGCAGTTCGCCTTACCGAGGC 4693844 29 100.0 32 ............................. AGCCCACCCGGAGGAGGAGCCCATGGCTGACC 4693905 29 100.0 32 ............................. GGCCAGCTTGCGCGAGGCGGTCATCGGACGAC 4693966 29 96.6 32 ......................C...... GGCCAGCTTGCGCGAGGCGGTCATCGGACGAC 4694027 29 100.0 32 ............................. GGTACGACGCCGACACCCACACCCTGCACCTG 4694088 29 100.0 32 ............................. CGATCATCGCAGCTCAGGCCCCCTGATTCAGT 4694149 29 100.0 32 ............................. CAGGTCTGCTCCGCGACCAACCCGAAGGCGTA 4694210 29 100.0 32 ............................. CGTCCGTCGCGGGGACGACGTGATGCATAGTC 4694271 29 100.0 32 ............................. TCCCGGCCGGGCGCATGGCGCGGATGCGGTCC 4694332 29 100.0 32 ............................. GGAACCGAAAAGATCTTCCGTGTGGGCACGAA 4694393 29 96.6 32 ............................T GAGTGATGGCCCCGGGCGGTCACCCGAGGCCA 4694454 29 96.6 32 ..........T.................. GACGGGTCACCGGGCACGGGCTGGGAGTTTCC 4694515 29 96.6 32 .........A................... AACATGCGCGCAGGCAACTGGCTGGCCTCAGT 4694576 29 82.8 0 .......................CTCG.A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : TGGCCGGAGACGGCAAGGTTCACAACCTCTACGTCTCCTGGGGGTACGGCGACCTGGGCGAAAGCCAGCCGTCGCCGGACTCTCCGGTCCTGGTCGCGATGGTGCGGGCGCTTCCCTGACGGCGCCCCTCGCCCGCGGGCTACGTTCGGAGAACTTGCCGCCTCCTTTCGTGTCGTGCTCTCCGAGTTCGACAACGCCCTCGTCGACCGCACCGGCACGCTCCCTGATTGGGCAGCCGCGTTCATCGACGGCAAGGTCTGGGTGCCGAAGAGTACGAGTACATCCTGAGCGTGTTCAGCCGGCGGGCGTGTCCATCCACCTTCGACGTGATCCGCACCTGCGATCGTCTGTTCGCGTCGACTGCCAGGCATGCGGGATGCGTACGGTTGCGGCACCTTAGGCTAGCGTCGCGCCTCATCGACTTAATGGCCGAATTGCCGCTTTCCCCGCAGTTGGTTCAACGCGGCCCGGGTCTCTGGCAAACCCGCAGGTCAGTCAGA # Right flank : AGTGCGCCTGGGCACGCGCATGATGACCGCGGCCGGGCAGGACTTCTACGAGCAGGGCGACATCTGGGCCCAGGTCGCCGAACATCGGACAGACGCCGGCGCCCCGCAGCCGGGGACGCCGACCTTGACCGTGGTGCAGCTCCTCGTCACCGCCGCGAGCGACAGTCCCGGAAGCCCCCTGACGCTGACGCCGGATTGGCCGACAGCCTTCGAAGACGCCGGACGTGCTCTCGCCGGCCTCGCTCAACAAGGCGCTCTCACCCGGGGACTACGGGCCATCCTCACCGACCACCTGCTCTTCGCCTTCAACCGACTCGGCATCCCCGCCCAGCACCAGGACCTGCTGGCCACCGCCGCCAGCAAAGTGATCTTCCACCGGCAACCGGCAGCCGACGACACTCCGTACGGCAGCCGGAACGACCACGTCCAGCCCCTTACTGTGAAGACGGTGACCACGGACATGACGGACCAGACGACCACAGAACCTCAGCGGCTGCGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4696629-4699465 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018365.1 Streptomyces sp. SN-593 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4696629 29 100.0 32 ............................. AAGTTGGTTGCGGCGGGCGCAAGTCGCCTGCA 4696690 29 100.0 32 ............................. CCGTTAAAGCGGTCTTCAACAGGTTCGCTCCG 4696751 29 100.0 32 ............................. GATCACTGACGTGCCGCGGGGAGCGGCACCCG 4696812 29 100.0 32 ............................. GGCGCCGTCGGGCTGTCGCTGGAGCGGGTGGT 4696873 29 96.6 32 ............................T ACGCCCCGGTCTGTCCGCCTTTCGGGGGCTTT 4696934 29 100.0 32 ............................. ATGCTCGGGTCGGCGATGGCGCTGGCGTCGAA 4696995 29 100.0 32 ............................. GCCCCCGCCTCGACCAGCGCCTTGACCGCCTT 4697056 29 100.0 32 ............................. GAACGCCCGCGGCCAGGTGCCGGGTGACCTGT 4697117 29 100.0 32 ............................. GCGGCCTGCATGCCGCGCATGAACGCGACCAG 4697178 29 100.0 32 ............................. GCGTTCCGCGACTCGGTGGACGAGGGAACCGC 4697239 29 100.0 32 ............................. TTCGGCTTCGCATGGTGAGGATGGGTACGAGA 4697300 29 100.0 32 ............................. ATGCTCTTGCCGCGGTCGTAGGGCGAGTCGTT 4697361 29 100.0 32 ............................. CACGCGACCCTGAGCACCCGCGCGAACGGCTG 4697422 29 100.0 32 ............................. GGGGGTACGTCGATATGCGATTCAGGTGCCCG 4697483 29 100.0 32 ............................. ACCCTCTGACCTGGAAGGACAAGCCATGGGAT 4697544 29 100.0 32 ............................. GTGTACCTCGGCCTGCCGATCCGAACGCTCGG 4697605 29 100.0 32 ............................. GACCGGCTGGTGAGAACGCTTCGTGCCCGGCT 4697666 29 96.6 32 ..............T.............. GGGCTGGTTCACGCGGTGACCTGCCGCGTCTT 4697727 29 100.0 32 ............................. GCCAGCGACGCCTTCGCCGAGGGTGCCAAGCA 4697788 29 96.6 32 ..............T.............. GGCCTGACGATCGAGGGCAACCTGATCGAGGC 4697849 29 93.1 32 ......................GC..... TCGCCGAGCGCGCCCGGGCGAAGCGCGCCGAG 4697910 29 100.0 32 ............................. ACCTGCTGGCACGTCGCGCGCGCGGCACGAGC 4697971 29 100.0 32 ............................. AGCTCGATGTCCTCGACACGCAGGACAGGGAT 4698032 29 100.0 32 ............................. GTGGACCACGTCACGGTCGAGACCGAGGCGAT 4698093 29 100.0 32 ............................. GACGTCACGATCAACGGCGAGGCCATCGACGT 4698154 29 100.0 32 ............................. AGGGCCTCCGCCGCGGGCAGGTCACCGGCCGT 4698215 29 100.0 32 ............................. GGCACCAGGCTGACGCTCTGCTTCGACCCGCT 4698276 29 100.0 32 ............................. ACCACCGGCCCGACGGCATACGGCGACGCCTA 4698337 29 100.0 32 ............................. GAGGATGCGGAGCCACGTTGGGACGTTGTGAA 4698398 29 100.0 32 ............................. GACGCGTCCTCATACGGCATGACCGTGCCGAT 4698459 29 100.0 32 ............................. ACGCACGGCACGTTGCTCGTCACGAACCGGAA 4698520 29 100.0 32 ............................. ACCGCGGTACGCCCCTCGGCGAGCGCTTTCAT 4698581 29 100.0 32 ............................. CCGGGCGGGTACCGGCAGCGCACCATCGGCGG 4698642 29 100.0 32 ............................. TAGCAGGCAACGCGAGCAACGGACACCGCGCG 4698703 29 100.0 32 ............................. ACGCTCACGAGCGCGGTGAACTGCCCCTCGTA 4698764 29 100.0 32 ............................. GACGTGGCCCCGGCGGGCCCGATCTTCATGGA 4698825 29 100.0 32 ............................. GTGGTGCGGTTCACCGCACCGCCGCTGACGCG 4698886 29 100.0 32 ............................. ACGCTCACGAGCGCGGTGAACTGCCCCTCGTA 4698947 29 100.0 32 ............................. AGGCCGGTGACCACCCTGTTCGGCAGCTTCGT 4699008 29 100.0 32 ............................. GATTGGGGGCGGGGGTGCAATTCAAGCGGGGG 4699069 29 100.0 32 ............................. GTCACGCTGTTCTCGTCGTGCAGGGCATCCCG 4699130 29 96.6 32 .......................A..... CACGACGTCAACGGGCACGGGAGCTACTGCCT 4699191 29 100.0 32 ............................. AGCACTTTCGGCGCCCCGCTCGCCTTCGTCGA GT [4699202] 4699254 29 100.0 32 ............................. AAGGGCTTCGAGTCCGGTGGTCTTGAGAGGGC 4699315 29 96.6 32 .......G..................... TGGCTGACCCCGTGGGAGGAGGAGCACCCGCT 4699376 29 100.0 32 ............................. TCCAGACCCATCAAGCCGATGCGCGTCGGGAT 4699437 29 93.1 0 ................T...........A | ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.3 32 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : CAGGCCGTCCAGCTACTTAACCGCTGGAGCGCCGAGCGCCCCGCCCAACCGGTCATCACCGCGTACCCCGCCGCCACCCCCGACGATCAGCTCGCCCCCGGAGCCCGCCTCACCAGGCCCGACACCCGCCTGACCATCAGCTGGTGACAGGGCACGACGTCGTGCGGTGGGAATTCGTACGGCCACATCCACACCCTGGGGGCCGAACACGGAAGCTGCCCGTGCCGTCGTCAATGGGCCAGATCTGCATTTCGTGGGGCCGCGTCCCTGGAAGTGGTTCGGCGCGATGCTTACGGGTTGCAGTCGTGGAGCCGCTGAGTCGAGCCGGCACGTTTGCTGCTTTGCGTGGTGACCGAGAGCGGTAAGCCTTCGCGCGGCCGTACGCTGTGCGGTGGGGAGCCGACGGCACCTCTCGTCCATTCAAAATGCCCTAAATGTCGCTTTCTCTGAAGTTGGTTCAGGGCAGCTTGGCCCTCTAGGAAACCCGCAGGTCAGTCAGA # Right flank : AAAGACGTGAGTGTGGGCTACATGGGCTGGCGTAAGGCCATGCCCGCCAATCTGATGATCGCCGATGCTCTGCACTGCCCGGTCGTGGTCCTGGAACGCAAGCGAGCGATCAACGCTGCCGACGTCCGCGGTTGGGGCCGCTCACGCTGTTGGGGTCCTGATTGGGCGGGTACGCCGCTGGTTGCTCGGTGGGCACAGACGGGGTTCGGTAGGTGGTGAGGGTGCTGCGGGCCATTGCAGCTCGCGCCAGCGGGCTTGGCGCTGGACGTTGGGCCAGGCGGTGGAGACGCCAGATCACGACGTGGGCGGGGGAGCGGGCGTCGGTGAGGGCGCGTTGGTCGGCTGCTTGGTGGAGGAGTCGGGTGGGGTCGTGGCCGGCGGTTTCGGCGTCGGTGAGGGTGGTGGCGAGGGCGGGCCAGGCGGGGTCGGTGAGGATCTGTTCGGCGTGGGTGGGGATGGTCTGCTGGATGAGGTGGTTCCAGCGTTCGATGGCCGGTTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 5984234-5984933 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018365.1 Streptomyces sp. SN-593 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5984234 29 100.0 32 ............................. GATCTGGGTTTCGGCCACGGCCGCCCCCTTGG 5984295 29 100.0 32 ............................. TCGTCCACGTTGACGCGAGCGAAGCTCCCGTC 5984356 29 100.0 32 ............................. TCGTCCACGGCCTGCCGGTGCGAGGCGACGGT 5984417 29 100.0 32 ............................. TGGGGAACCGTGCGGACCCGACCTGGGCAGGC 5984478 29 100.0 32 ............................. GAGATGGACGACGGCTACGACATCTGCTTCTC 5984539 29 96.6 32 ............................T ACGTTCCGGAGTCACCGGTCACCCCCGAACTC 5984600 29 100.0 32 ............................. CCCCTCAGCCCGTACTACGGGCTGATTGGCCG 5984661 29 96.6 32 ............................A TCCGCTACGACTTCATCAAGCCGCCGGCCGGT 5984722 29 100.0 32 ............................. GACGAGCGCAACATAACAGCCCTGGTCAGTGA 5984783 29 100.0 32 ............................. GAGGGAGCCGACTACGCCCACCTCGCCGCCGC 5984844 29 100.0 32 ............................. AAGAACCTGCGCGTGCCCGTGGCGTTCGCCGA 5984905 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CACAGAACCTCTTCGACCGATTCGCTGATGCTTCGCAAACACCAGCAAACCGAACGAAGAGGTCTCCTTCGTCTACGGAAGCGATCAGGAACACCACAGGCCGGACGGCCACCCACCTGGAATTCTGGTGGCCATCAGCCGGGACTCAACTGGCCGCACACCCGGACTCTGCCACGGCCGCCGACAGGTGCCCCCGGCAGGATTCGAACCTGCGCACACGGCTCCGGAGGCCGGAGGAGCGGTTACTCCTTGAACGGCCCTGATCAGGGCGGAGTTGAGATCAAGCGACGGGTAGGGGCGTGATCATTACGTCCCTACGACGTTGGCAGGAGCTGTTCAAGTGCCGACCTTCGCGGGTGCGTTGCGCGGGCGGCGTCTCGTCCAGGCCGACGCGCGATGGAGCGATGTGGAAGTGCGAGGCCGTTATGTTTGATATGCCCGAGTCGGCGGAAGTTGTAAAATCCGACCCCATCGGCCGATAGAGTCCCAGGTCAGAAAGT # Right flank : GCTGCCGGGGGAGACACGCGACCGGTGGTGAACGAAGCGCGGCAAGCGCATGGCGGGTGCTGGGCGCGTAGATGCAACGGTTCCGAGCTGTCCGGGGAGAACGGCGGGTGGATCAGCTTCTGCGCGCCGTGGGGTCGGGGCATGGCGAGAGGTGGCCAAGGGGCAGTGGACGTGGCGGGTGGCGGCGGCGCGGGGGAGAGGTTCACGGAGGAGGTTGCCGCGGGGGTGCTGCGCCAGGCGTGTGGCGAGGTGGGACTCGACGCTGCCGGGGCGAGGCTTGTGCGGCTGGGGTCCAACGCCGTGTTCGCGCTCGCCGGGCGGCCGGTGATCGTTCGGATTGCTGCCGACCCGGATGCGCTTGCCGAGATGGATCGGGCCGTACGGGTGGCGCGGTGGCTGGCCGAGGAGGTGATCCCGGCGAACCGGTTGCTCCCGGGGATCGCCCGACAGCCCCTGGTCGTGGGCGGCCGGGTGGTGACGTTCTGGGAGAGCGTGCAGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6741412-6740353 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018365.1 Streptomyces sp. SN-593 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6741411 29 96.6 32 ............................C TGCTGGGAGCACCTCGCCGAGAACACCGTCGA 6741350 29 96.6 32 ............................T CAGCCCGGGCAACCGTGCCCCGCCGCGCTGCC 6741289 29 100.0 32 ............................. CAGCGGACACGCGAAGACTCCGCGACGGCAGG 6741228 29 100.0 32 ............................. TCCCCGCGTGGCGGCCGGCGGACGGGCCGCTG 6741167 29 96.6 32 ............................A CTCCCCGCCGACCGCGAGCAGCAGCTCGCCGC 6741106 29 96.6 32 ............................C CGCATCCGCTCCGGCCAGCAGACGCGCTCCTC 6741045 29 100.0 32 ............................. CTTCACATGTACAGCGGGTGCGCTAGGGGAGG 6740984 29 100.0 32 ............................. CCGTGCAGCGCGGCGGCGGCCCACGCGCGGGC 6740923 29 100.0 32 ............................. GCCGCTTCGACCCCCTCTTCGAGTGTTGTGGA 6740862 29 100.0 32 ............................. CCGCTGTTGAGGTGGGCGGCGCACGTCATGAC 6740801 29 100.0 32 ............................. AGGGATAGGCGTGAGCGAGTCGAAGACGGAGG 6740740 29 100.0 32 ............................. AGCTTCGTGGCCCCCACCATCCCCGCAGTCAG 6740679 29 100.0 32 ............................. GTCACCCAGTCCCAGACCTGCGGGAAGCGCGC 6740618 29 93.1 28 ...........A.A............... GACGGCGTGAAAATGCCATCGCTCCGTA 6740561 29 89.7 32 ..A..TT...................... CTGGCACCCGCGTAGCCGGCCTGGCGGACGGC 6740500 29 100.0 32 ............................. ACAAGCAGGACACGGACGTTCACGGTCTCGGG 6740439 29 96.6 27 .........................C... GCCCTTCAGCACGAGCCAGGCGCCGCA CC [6740415] 6740381 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GAGGGCGAAGCCCGCCCGGCCGAACATCCGGCACTTGAGCATCTTGATCCGGTTGACGTGGCCTTCGATGACGCCGGAGCTCCACGGCAGGGTCAGGCCGGCGATGACGGCGTCGCGGTCTTGGTCGATGCCTGCGGCGAGGGTGTGGAGGCTGGGCAGGTCGTCCTGCCGAACGGCGTCATTTAGTCCGGCAGGCGCTCGCCTTGGCGCTCGGTGAGCATTCCCGCGAAGGAGCGGACATGCCTGATGAGGGCGTCCGGTTCGGGGCAGTAGGCCCGGACGGTTTTGAGTTGGAGCCGTACGGACTCGGTGAGGGTGTCCGGGTGGCGGAGGATCCGTCCGTACCGCTTGCTCATTCTGGCCACGTGCTGCCACACGGCGCCGCCACCACACAAAGCCCTGGGCGATACCGCTGGCCCTTCTGTCAGACTGACCACGTGAAGGAACCCTGGGCGACCCAAGGAATTGCAAAACCCTCCGGAAACCGCAGGTCATGAAGG # Right flank : GGACTCCCCCACCGAATTACCCGCCCGCCAGGGGCCCCGGTCGGGGCGCCCGGCGGGTCCTGCGCCCGCTCGGCACCGCCGTTTGCGTTCGAGCGCGCTCACACCCCTACCGTCCCGGGTATGGAAGACGACGACGCCCTGCGGCAGGCCCTGCGCCTGGCCGTGGATCCCCCGGGCGGGGTGTCCGCCGAGGCACTGCGCGAGCTGGCCCGCGACGACGACGCGACCGAGTGGGACATCGCGACCACCGCCGAGCACCTCGGGGTCAACCCGCACACGCTGCGGTACTACGAGCGGATCGGTCTGGTCCGCGTTCCCCGGGACGCGGCCGGGCACCGGCGCTATGACGCCCCGGCGGTCCGCCGGCTGGTGTTCCTCACCAGGATGCGCACCTCGGGCATGCCCATCAGCGACCTGAGCCACTACGTCGCCCTCGTCGACCGCGGCGAGGACACCGTCCCCGAACGCCTGGACATGCTCCTGGAGCACCGCGACACCCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 6743512-6742628 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018365.1 Streptomyces sp. SN-593 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 6743511 29 100.0 32 ............................. GTGGCGAAGCCCGTCGTTTTGGACACCGGGCC 6743450 29 100.0 32 ............................. GAACGGTCACCATCTCCCTGCCGGACCTGGGC 6743389 29 100.0 32 ............................. TGACGTATGACCCCCACCCTGACCCTGGCGCG 6743328 29 100.0 32 ............................. CCCCCGGCCGGATGCCGGGGGCTTTCGTGATC 6743267 29 100.0 32 ............................. GACAACCCCCGCCTGCTGGTCAACAGCGAGGC 6743206 29 96.6 34 ............................C CGTAGACACCCTGAGGAGTCCGTATGTCGCTCGA 6743143 29 100.0 32 ............................. CCAACCTGCTGGCAGCAGGCCTGGTGCGCACA 6743082 29 100.0 32 ............................. GCGCCGCCGGTGATGTCGGCGTAGGTGGAGTC 6743021 29 100.0 32 ............................. ATCCCCTTCTCGGCGGGGTCGATGTAGTGGCA 6742960 29 100.0 32 ............................. TGAGGGCGTGGAGACCCGGCGAGGCCGTGACG 6742899 29 96.6 31 .............A............... GTGCGAGGGCATGGTGCCGATCACCGCGTTC 6742839 29 96.6 32 .................A........... CGCTCGAACTGACCGGCGTCCCGTACGTGATC 6742778 29 96.6 32 ......................C...... TTCCGCAGGCACCCGGTCGTGCTGTGGATGCT 6742717 29 93.1 32 .............A.A............. CAGCACCGCCGGACCGAGCAGCGCGAGGCATG 6742656 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 15 29 98.6 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CCTCGGAAGTCCCTCCGACAGAGCCGAAAGTCCCTGAAAAATCCCCGGGATCGAGAGTCCTCCGGGCAGCACCAGCAGGAGCAACAGCGCCGAGGCTCCGCGGCCGGCCGAACCCGATGCCGGAGCGAACCCCGGAGCAAGTCCCACCGGCTACCGAGGACGCAACCATCCAACCCCTACGGAGCAGTGTGGCACCGGACGCCACTCCAGCGGACGTGACCCCTTCAGCAAAGTTCCCGCCCCTCGCCGAACGGCCGCCTGGAACACCCACCCGCAACCGCACCGCGATTCGACGGAGACAAAACTGCCTGCCGCCGATGCCTACAAGTGACTCTCCGTCCGTACCGCTTGCCCATTCTGGCCACGTGCTGCCACACAGCGCCGCCACCACACAGAGCCCTGGGCAATACCGCTGGCCCTTCTGTCAGACTGACCACGTGAAGGAACCCTGGGCGACCCAAGGAATTGCAAAGCCCTCCGGAAACCGCAGGTCGTGAAGG # Right flank : ATCCCGGGTTCTGGCTCAGGTTGTGTGGTTCGGCCACGCTGAGTGAGTGGATCAGTCCGCGGTTGGCCGATCCCGGTGGCGAGAACAAGCCCCGGGTTGGTCACCCGCTTCGGCTGCAGACCTCTTGCTAAGGAACTGCTTCGCTGCCTCAACCGCTTCCCCGTTGAGTTCCTCGATGGAGACTCCCCAGCTCTCCTCCCAGCCGTCTAGGTTGTGCGCGCAGTGCACAAGGGGTTCTAGCTCTTCGGGATAGCCGAGGTCGTAGGCAATGTCTGCCCAGATGAGGTGAGTGCCGGCGGTGGGATCCAGGGTTCCGTCGGCGATCCGACCGGCGATCCAGTAGGCCATCTCCCACTTTGCGGCCTGAGGGTCCGCGGGCGGGTGAAAGAGCAGTCCCAGTTCCTCCAGTACTTGGTCGAAGAGCTCTGGCGCTTCGGGCTCTTCGCTCCGAAGGAGTCCAGCCAGCATGGCAAGGGACGGGCTTTCGACCCCTGCTATCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 8218899-8215939 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018365.1 Streptomyces sp. SN-593 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 8218898 28 96.4 33 ........................C... CTCCTCGGGGGTGAGTGGCGCTTCCATGTTGTC 8218837 28 96.4 33 ........................C... TCAGCCGCTGTACGGCCGGGAGTCCCCCGGACT 8218776 28 96.4 34 ........................C... GCTGATTCTGCACCAGCATGTCCAGACCCACGAG 8218714 28 96.4 33 ........................C... CCCCCGAGTGCCGGCGCCTTCGGCACCGGCCGG 8218653 28 96.4 33 ........................C... GCGTGGGTCGCGGCGGGCGGCGGCCTGGTGATG 8218592 28 96.4 33 ........................C... GACATGCGGCGCATTGCCAGCGAGCAGCGCGCG 8218531 28 96.4 33 ........................C... CAGGGCGCCGCTGCCGGCGGTCACGAGCGCGGT 8218470 28 96.4 33 ........................C... AGGGGTCATCTACCTGGTGGCGAGCCGCATCTC 8218409 28 96.4 33 ........................C... TCCCCCCGACGACGTATGCCACGCGCACCCAAT 8218348 28 96.4 33 ........................C... GGCGCAGCGCCGGTTCGACCTCGGCGCGGTGAA 8218287 28 96.4 33 ........................C... GGAACAGGCCCGGTTGCTGTTCGGGCCGGTAAA 8218226 28 96.4 33 ........................C... CCAGCGGATCCCGGCAGACTTCCGGCTCTACCG 8218165 28 96.4 33 ........................C... GGCGTCAGCGGCCCCGTGGGGGTGCCGCAGCCT 8218104 28 96.4 33 ........................C... CGGTCTGCCCCTGCGGGGTCCACTCCTCGACGC 8218043 28 100.0 33 ............................ TGACGACGCTGTCTCAGGCGCAATTGGCCATGT 8217982 28 100.0 33 ............................ GGACCCGCCCATCATGTCGCTCACCGTCGCCGA 8217921 28 100.0 33 ............................ CTCGATGCGCATCGGTGCGACCGTGCCGTGCGG 8217860 28 100.0 33 ............................ CCACGAACGCCATCGCGGAGGAACTGGTGGCCG 8217799 28 100.0 33 ............................ GGGGAGGCGGCCGCGGTCGTCGGGCCCCGCGGT 8217738 28 100.0 33 ............................ CTCGCGCAGGCACTCGTTCAACGGCTCGTCAGC 8217677 28 100.0 33 ............................ GGGAAGGGGGAGAGGGGGAATTCGGCGCCCAGG 8217616 28 100.0 33 ............................ GGTAGACCAGTAGCGGGCTTGGCGCTAGTGGTA 8217555 28 100.0 33 ............................ CCAGCTGCAGCAGCGCGACGAGCAGCGCCGGCT 8217494 28 100.0 33 ............................ CGCCCTCTTCCAGCATCTCGGTGGCGTCGATGA 8217433 28 100.0 33 ............................ CGGCGGTCGGCGGATGGCCGCCAGGAGTGGAGG 8217372 28 100.0 33 ............................ GTCCGCGATCCGCACCTCCACGGTCGGGTCAAG 8217311 28 100.0 34 ............................ TCACCGGGCTGTACGCGGCGGAGGTGCAGGCCAC 8217249 28 100.0 33 ............................ CTTCGACGACAGCAGCACCGCGACGACGGTGTT 8217188 28 100.0 33 ............................ GCTGTAGGTCGGCTTCGCGACAGTCGTTGACTG 8217127 28 100.0 33 ............................ GTGGGCCGTGTGGTCGCCTTTCTGGCCGGACCT 8217066 28 100.0 33 ............................ CGGGAGCGAGATCGCGATGCCGCTCATGTGGCT 8217005 28 100.0 33 ............................ CTGGCATCTCGCGATGCTGATCCGGGATTCCGT 8216944 28 100.0 33 ............................ CCAGCGCTTGCCCAGGATGCGCAGGCCCTTGGC 8216883 28 96.4 33 ..........................G. TGTTCCGCGGCCCCACATTCCGCACCATGTACT 8216822 28 100.0 33 ............................ CCCGACGGCGAGGAGGAACGTGACGATCGCCCC 8216761 28 96.4 33 ....................A....... CGAGTGGGACGCGATCGGCGCGACGCTGGCCCT 8216700 28 100.0 35 ............................ CGATCGTGGGGAGGGGGGGGACCCGCTGAGCGAGG 8216637 28 100.0 33 ............................ GACGGGGGAGGGGTGGGAGTACGTCGGCGACGT 8216576 28 100.0 33 ............................ CGTCAGCGACGACGGGTTCGCCCCGCGCTCACG 8216515 28 100.0 33 ............................ CATCGGCTCCTGGTGCTCCTTCGCCGCGCGGGT 8216454 28 100.0 33 ............................ GCCCCCGGCGCGTGGCCGGAGGCATACCCGAGG 8216393 28 100.0 33 ............................ GACCTCGGCGTACGCCCGCTCAGCACACACCTT 8216332 28 100.0 33 ............................ GTGCTGCCGCGAGGTTCGGACGAGGATGCCGCC 8216271 28 96.4 33 ........................C... TTGCGCGGCGGCGTCCGTGCCACTAACCCTCGT 8216210 28 100.0 33 ............................ CCGAGTGGGCCACGGTGGCTCTCATCGCGGTTT 8216149 28 100.0 33 ............................ GAGGAGTGGGTGCGCGCGATCGGCGGGCCTGTC 8216088 28 100.0 33 ............................ CTGGGAGATGTAGGTCATGCGGATGGTGCCCTG 8216027 28 100.0 33 ............................ GTACGACGCAGCGAACACCGCGCCCCCGCCGGG 8215966 28 92.9 0 ............T...........C... | ========== ====== ====== ====== ============================ =================================== ================== 49 28 98.6 33 GTCGTCCCCGCACCCGCGGGGGTCTTCC # Left flank : CCGCGACACCGGATCGCCCGCATCCGTCCGCTCGACCCCTGACAACCCGCACGGTCGTGCGACATCTCGCGTACGACGGTACTCAGGACGACTGGATGCCACCGTCGCGGGAGAGGACGACTCCGGTCATGCAGGGGGCGCGGTCACCGAGCAGCCGGACGGCGACCTCGGCGACCCCGGCGACCTCCTCAGGCCCGGCCGGCTCCAGTTCGCCGTGAGTGTCTCCGTGTGGATTGCCGTCCTCACCCTGATTGCCGGCCCGGTCGACCGCCCGGTCGACGGCACGCTCGCCGGAGCAGTCGGCGCACGGTGTCCCGGGTGATCGGAACGGCGAAGGGACTCCCGCCTACTCGTAGGCTGTCAGCAGCGAAAACCGACCACGGATGCTCCCGAAGCCCATGCTCAGCCCTCCGCCTGTCCTGCCATCCGAACCCGTACACGTCCACGAGCAACTAAAGAAAATCGGCGCCTCCACCCGATAGAGTCCCAGCTCAAGAAGC # Right flank : CGCGAAGGTCGTCGCTGAGACGGCCGCTGGGTTGTCGCGGCAGGCGCGGCGGTGGGGCTGTCGGGCCGGGCGGTGGGGTTGCTCACGCGGTGGTTCTCCAGCGGGGAGCGTCAAGGTCGGGCTCGTCGGGGCTGGTGAAGTGGAACGGCACGGCGAGGTGCTCGGCCAGGGCACGGCCGACCGTGTCCGCCTCCTGTGCTTCGGGCCAAGGAGGAACCGAACCGTTGAACAGCCGCATGTCACTGCCGTGCCGGATGCTCGCGAGCCGGTGCTCGGCAGGCGGATCGTCGGCCAGTGCTATCAGGTCCACGCACCAGCCGTCGGTGTCGCCGTCCCACACTGCTTCGATGGCCACCGTCCGGCCGGGCAGAGCCTTCACCTTCTCCGTCAGTGCCGGCAGGTTCAGCGGCGGGGTCGGGTAGCGCTCGAACCGCTGGCCGAGCTCCCGGTAGCGTTCCGCCACCACGTCGAGCGCTTCGTACAGGCCCGGCCTGGAATCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTCTTCC # Alternate repeat : GTCGTCCCCGCACCCGCGGGGGTCCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //