Array 1 78553-76771 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFN01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2187 NODE_10_length_194732_cov_6.23199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 78552 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 78491 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 78430 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 78369 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 78308 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 78246 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 78185 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 78124 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 78063 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 78002 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 77941 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 77880 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 77819 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 77758 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 77697 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 77636 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 77575 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 77514 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 77452 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 77349 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 77288 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 77227 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 77166 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 77105 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 77044 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 76983 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 76922 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 76861 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 76800 29 96.6 0 A............................ | A [76773] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96178-94685 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFN01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2187 NODE_10_length_194732_cov_6.23199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96177 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 96116 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 96055 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 95994 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 95933 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 95872 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 95811 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 95750 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 95689 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 95628 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 95567 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 95506 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95445 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95384 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 95323 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 95262 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 95200 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 95139 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 95078 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 95017 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 94956 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 94895 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 94834 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 94773 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 94712 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //