Array 1 6235-3893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLJ010000060.1 Alkalihalobacillus sp. YIM B00296 Scaffold60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6234 32 100.0 33 ................................ ATCAAAGAGCCCAGATGGCTGTGTGGTTAATCC 6169 32 100.0 33 ................................ CCTTTACTACTTGAACCGATCACCTGAATATCA 6104 32 100.0 35 ................................ TTTTCTCATCTGTTCAGGATGAGTAGAAGGAAAGT 6037 32 100.0 34 ................................ ATAACCCTTGCATAGTCATTTGCAAAACGAAACA 5971 32 100.0 35 ................................ TCATTCTTTGTATAAACTTTTTAAACTCTTTATTC 5904 32 100.0 34 ................................ CGTACATTACCGCGAGTATGCCGGTTTTCATCAT 5838 32 100.0 33 ................................ GAGACTGTTGTCATTGATCGTTTCCTGAAATTC 5773 32 100.0 34 ................................ GCATACTTTTCGTGCGCGTACGAAGCTACTTGCG 5707 32 100.0 35 ................................ GTCGCGATCGCGTTTGACCTCCTCCCATAGATCGA 5640 32 100.0 36 ................................ GATCAAGTGATCGGACGTATGGGCGACCTGTACGCA 5572 32 100.0 34 ................................ GTCAATAACCGCCACACTATATAAAACTAACAGA 5506 32 100.0 33 ................................ GCCTCTATGCGACCAGTATTCGTATACGGCCGC 5441 32 100.0 34 ................................ TGGAAAAGGCACTTGCAACGTACGATCGCTTAAA 5375 32 100.0 33 ................................ CTTTACTCGGATGAATACCGAGACTACACTTCC 5310 32 100.0 33 ................................ TTTTTATGGGACTTCAAGAGGAGTAGGTACACA 5245 32 100.0 34 ................................ ACCAAGAACATCAAAAGAGAACATTGAAATGCTG 5179 32 100.0 33 ................................ ATAATCACTTATTCCGAAGTGCATGTCGAATAG 5114 32 100.0 35 ................................ CTTTTTGAGAAGTGGAAGGCGTCCCCTATAACCCC 5047 32 100.0 34 ................................ GATTCTCGTTCAACCCAAATGACTCTTAATCCGT 4981 32 100.0 34 ................................ TTCGGTCTTCGGATCATGCACGGTGTAGTAAATC 4915 32 100.0 35 ................................ CAAATCATAAACACGTCGGGTTCCATGTATCCTTT 4848 32 100.0 33 ................................ AACTCCTTACAAATGAGCTCCATTAGATCGAGA 4783 32 100.0 34 ................................ AATGGAACGGCTGAAGCCCTTTTGAATGATGCCC 4717 32 100.0 34 ................................ GCTAATGACGGTATGACGACTAGGGGATATTCGT 4651 32 100.0 33 ................................ GCCGGAAAATAAACGTGATTCATGATGAATGTT 4586 32 100.0 33 ................................ GTATTGTTGGAGTTTCTTGTTTGAATAATTGAT 4521 32 100.0 35 ................................ TTACGGTCATAGTGCATCACGTTATAGGATAATTT 4454 32 100.0 36 ................................ ACATAATGTATTCATAATAATACTAGGATAGTTTGA 4386 32 100.0 32 ................................ ACAATTGGCGGTGCGATTGCAGGAGGAATTTT 4322 32 100.0 36 ................................ ACATAATGTATTCATAATAATACTAGGATAGTTTGA 4254 32 100.0 34 ................................ GTCATACTCCCTTTTCAATTGTTCATTCACCGCC 4188 32 100.0 33 ................................ TTCTCACCGTTGCGTTATATGCCGACCAATCTT 4123 32 100.0 34 ................................ ATGCCATCGAAGTCATACCAGTTATGAAAGCCTT 4057 32 100.0 35 ................................ ATTGAATTACTGGAAAAGGCATTACTTACAGGGAT 3990 32 96.9 34 ..............T................. AACAGATTATATTTTAGGATTGACGGATGATCCT 3924 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.8 34 GTCGCATCCTTCATGGGTGCGTGGATTGAAAT # Left flank : TTAGATGAGTATCCACCCTTTTTATGGAAGTAGGTGTATGACTTGTTAGTGTTAATTACTTATGATGTAAGTACGGTTACTGGTGCAGGACAAAAAAGGCTACGGAAAGTATCGAAGATGTGTCAAAATTATGGTCAGCGAGTCCAAAATTCTGTTTTTGAATGTGTTGTAGATGCAACTCAATTGGCCACTTTAAAAATAGAACTTGCTGAAATTATTGATAAGAGTCATGATAGTCTCCGGTTCTATCAATTAGGGAATAACTATAGGACCAAAGTCGAACATATGGGAGTTTGTGAATCTATTGATGTAGAAGGTCCTCTGATTTTTTAGTGCGCATGTCAAGCGCACATTGATTTACTGATACTTTCGCACCTGAATTCAGACATATAAAGACCATTATTTGTTATTTCTCTAATTAAGTCCTTTATTTTATAAAGGAAATAGCGTTTTTTTGATTAAAATCACGCACTTTTAAGTTATTTTGATTAAAAATCGCT # Right flank : TTGCAAAAAAATCATAAGAGAAACAGAACATCCAAATAGGGTAAAAGTCAAAATGGATACAAACTGTGTAAGCTACGATGTTACGATAGTAAGTATTAACTTTAATGATAGCTATAGGCATTGTATTATTACAAATTCAGATTTCGGGGTGTCGAACCCCTTCAATCTGATAACCCGATCTATGTAAATCTCCTTCTTTGTTCTTCTCATTATAATCCTTTACTCATGAGAGTAGTAAAGGGATGCTTCACTAACGTTCCGCAAACCTTATGAACTTTTTAAAATAGAATTCAAAAACTTTATAAAATTCAAGCCCCTTGATAGCTCTTTTCGCAAAGATTTTAAGTCGATCAAACAAAGAAAGGAGCTGTTAAAGCTATGGAAACAATTTACGAAATTCAACGAATTAAGCAAGTGATTTCCGAGATCGATGGAGGTGATACATACGTCTTGGTTCTCCTGAAGATGCAGCGAAAGTTGCTGCTGTATTTATTGGTGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //