Array 1 4961-5356 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEM01000135.1 Staphylococcus xylosus strain SNUC 2570 contig135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 4961 36 100.0 35 .................................... TCCATTTTTATAACAACCTTTTAAATATTTATAAG 5032 36 100.0 35 .................................... CCCTGAAAAGTGCTACCAAAGTCTGCTGTTGTTAA 5103 36 100.0 36 .................................... AATCAAATCCTTTTAATTTATTTGTCGTTATTTGCT 5175 36 100.0 37 .................................... TTCATTTTTAAAACTCCCTTTTTGTTTGGTTTTGTAT G [5203] 5249 36 100.0 37 .................................... TGTACTGTGTGCGTTTCTGTGTATAAATAATTTTTGT 5322 35 91.7 0 ..............................-...GT | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 98.6 36 GATCGACAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : TTGATTAATCGATTTAATAATTCTAACGCAACATTTTTTTGTTTCAGTCATTCGACATCTTTTAAAAAGTCATCAGACAGGATTGGTAAATCGGGTTGTTCAAGGCCTAGAGTTTAATAAGTGTCAAGTCAATGAAATCTTCAGTTAATAGCGTATATTTGATTATTATAAGTTTAAACATATTAAAATTAAATACTTATCATATATGGCTTTTTTATTATTTTAATATAGAAGTATATTTTACTTTCCTGAACAGTAGTTATTAAATTTATCTTTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTTTTAATATAAGGAAAATCATCATAATATTTGTCAAAAAAAGTGACATTTTATATAATAGCATGGTGTTAGTTGTCACAATTTTTGACAGCAAAAATAATAATTAAACCCTTGTGGTTATGCTAATTATTAAAGTATCG # Right flank : GTAAATTTAATAACACTTTAAAAAATTGTAAATTTTTAATGAAAAACGTATTGATTAATTTTTAGGAGTTGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTATTTGAAGAAATAGAAGCAATTATTTTTGATCATTATAAAAGTTATTTTTCTCATAAGTTAGTAATTAAATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGACAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 808-1055 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEM01000107.1 Staphylococcus xylosus strain SNUC 2570 contig107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 808 36 94.4 36 ..CT................................ TCTAAATCATCTGAAATTTGATAATTTTTGAATATA 880 36 100.0 34 .................................... TCATTATAATCAATTCCTTTTCTTTTTATTTGTT 950 36 100.0 34 .................................... CCAAAATCAGTAGTATGCATTTGAACACCTCCTT 1020 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 97.9 35 ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Left flank : TATGTAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTGGAAAAAAACATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGGCCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCGCTATTTTTGACAGCAAATTTTGCCTTTGAACTATTGATGTGATAGGCTTTAAAGAGCT # Right flank : CTGAATTTTGAAACTTATGTGTTCCGTCGAATTCGTCATTCAATAACCACTTTGTATAAGAGTGGATAATAATTTATAATTTCGTAGTTAACTTGATTTACAAATACAAAAAATTTCATTTGCATTTAAAAGTAGAAATTAATTAGTTTAAATAATAAAAAAGTAGTGAAATTAATAAGATATTGGAGGAGGGATTAAATAGTAGAGAATATTGATGGCAATAAAATGAATAATATTTTAGATTGGGTTTATGAAAAAATTCTAAGTGGATTACCAGGAACTTATTCAGCCAAAGAATTAGCAAATAAATATGTAGAAAAATATAAAGATGAAGACAAAGCTATTAATAAATTAGTAAAAGGACAGTTAAGTAAAACTGGAACTTCTGGTTTCATTACAGGCTTAGGTGGTATAGTTACACTACCAGTAGCACTCCCAGCTAATATAACTTCAGTTGTTTATGTGCAAATGAGAATGATTGCAGCCATTGCTTATATAAG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 2104-2506 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEM01000107.1 Staphylococcus xylosus strain SNUC 2570 contig107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2104 36 100.0 38 .................................... TTTTCTCTTGTAGTTTCATATTAAATCGCTCCTTAAGT 2178 36 100.0 40 .................................... GCATGTCGTCCATCAGTAATTTTTATAAAATTTGCGCCTT 2254 36 100.0 37 .................................... TGCGATTGTCATTGCAAGCCATTTGATACATCTTGTC 2327 36 100.0 37 .................................... GCTTCGTTGTATTTATCACTGTTATTCTGCATATTTA 2400 36 97.2 35 ...T................................ ATTTCAAGCCCTGCATATATGCGCCCTTTTTCTTC 2471 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 99.1 38 AATCGACAACCACCCCGTAAAAGAGGGGACGAGAAC # Left flank : TTAACTGGACAAACAGCAAATGATATATTAAAAGATGTTGGAGTAAAAATGGTACAAAGTGTTGGTAAATCACAATTAAAAAGAATACCAAGTGATGTACTTCTTAAAATTAATCAAAAAGTTGGATTTAGATTGGTAACCAAATTTAGTGAAAAAGGATTAATTAATTTAGGAAAATGGTACCAATGCTAGGTGGAGTTATAGGAGCTTCATTTGATATAGCTTCTACTAAAGCAATTGCAGAGATAGCTAAAAAAACTTTTGAGCCATTTGATCAAGATAATGATAGAGTAAGAATAATTATTAATTAGAGTTAAATTAATGACTGCTTTTTTATAGCGTAAGTAAAAAAATAGTCTATATATTTAGTTGTTGAAAAGAGGGATTAGTTTGTCAAAAAATATGACAAGAAGCACTTATAGCATGGTCAGTTTGTCACTATTTTTGACAGCAATTTTCACCTTTGAACTACTGATGTTATAGGCTTTAAAAAGCTATCT # Right flank : CCTCATCTTGATGATCTCAATTGGCTTGGTTCAAAAGAAATCGATAACCTCCGTAGAATAGAGAATAAGTATTAAAAATATATTTGATTTGACAAAATATTCTGCAAAAAAAGGGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCATTTCTAAATAAGCAGAAACAAAATAACGTTCATACAAATAATTTCTTTATGATTAAGTTAGAATTAGAAAATCAATGCGAAATACGAATAACAGCGAATGGAACGTATATTATTGAGAGATTGGATGCAGTGTATTGCAATTCGAGAGTTGCTACTTAAGAAATTAAAAAGAAGAAAAACAATCTAACGAACATCAAAAAAATGTAAAATCGAATGAGCAAACGAAAGAGCCATCTGCCAATGATAAACAGAACTCTGGCACAACAGAAGAAAATAACAATGATAAAAATACTGAGAATAATAAAAAATCAAGTCAAAAACAAAAAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGACAACCACCCCGTAAAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //