Array 1 161752-163301 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJU01000054.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 100ev NODE_8_length_198955_cov_10.0261, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161752 29 100.0 32 ............................. CCGGTTAATTTGTTGTAGCCGTCGCGGGGCGG 161813 29 100.0 32 ............................. CCCGTGTGCCCTTTCCCCTTGCCGTAGTCCAA 161874 29 100.0 30 ............................. ACGGTACACACCATCCTCGTTGATGATGGT 161933 29 93.1 32 CA........................... GCCCCGATAGCGTCAACTATCAGGGCCTGCAA 161994 29 100.0 32 ............................. TGGGTGCGTCTGCGTGATTTTGCAGTGTACCC 162055 29 96.6 32 ............................T ATACGGTGCCGCCTTGCTGTGAATCCACGGGC 162116 29 100.0 32 ............................. TTTATACCGCCCTCGCCGTCTGCCGGAATATT 162177 29 100.0 32 ............................. GGTGCAGGGGCGGCGTATTTGCGCCTGCACCT 162238 29 100.0 32 ............................. TGACAACGGTGACAATAAAACAATCGCCAGTA 162299 29 100.0 32 ............................. GTTCTGTGTTCGTCTACGATTCAGAAAAATGG 162360 29 100.0 32 ............................. CCGCCTAAATAATCCGGTTTCCCATAAATCTG 162421 29 100.0 32 ............................. TGATCGTGATGAGTTGCCATGCGCGCAGGTTA 162482 29 100.0 32 ............................. CGTCCAGTACCCGTCCTCGTCGCGTTCTACAA 162543 29 100.0 32 ............................. GCACTCCAGCGCCACGGAATACAGGTCGGCCA 162604 29 100.0 32 ............................. AAAAAACCAATAGCACACGTAGCATTAGTAAA 162665 29 100.0 32 ............................. TAGCCAACGACTGATAGATGATCTCATAGAAA 162726 29 100.0 32 ............................. TGAGGGGGTTATGACAACCACCATAGTGATAG 162787 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 162848 29 100.0 32 ............................. CGCGAACGCGCGCAGCAGCTGCCGCAGGCTGT 162909 29 100.0 32 ............................. GTCGCGTGAATCCGGCTAATCTGGATGATCCG 162970 29 100.0 32 ............................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 163031 29 96.6 31 ...........................T. AAAAAATGCGATCGGTACTCAACCCGGCCAC 163091 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 163152 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 163213 29 96.6 32 ...........................A. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 163274 28 86.2 0 ...............A.AA....-..... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTTTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179424-181161 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYJU01000054.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 100ev NODE_8_length_198955_cov_10.0261, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179424 29 100.0 32 ............................. GTATTGCGCCGCCTGGTTGAGCGTTACGCCGA 179485 29 100.0 32 ............................. GTCGATACAAACACAGGGTGTTTTAAAATTTG 179546 29 100.0 32 ............................. CTTGCAAAACTTCGAGAAGGGGACGTGGTTTT 179607 29 100.0 32 ............................. CTACTGCAGGGATGTTGGGATGTACGGAAAAA 179668 29 100.0 32 ............................. CCGTTGATTAATTTCTCAGTGTTGATGGAGGA 179729 29 100.0 32 ............................. GCGTCGGCCATTTCTCCCAGCTCCGGCACGCC 179790 29 100.0 32 ............................. AGGATTTATCGATATCTGCCAGCGGCGCAAAA 179851 29 100.0 32 ............................. GGGCTGCACCAGTTCCTGCGCGATAAAACGGA 179912 29 100.0 32 ............................. CTCGTCCTTTTTGATTGAGTTCTCGTCATATC 179973 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGCGTT 180034 29 100.0 32 ............................. AAAAGCTTCGACAAATCCAGCTAAAACACTAC 180095 29 100.0 32 ............................. TAGAATGTGCAACTACGCAAAATAGAAATGAC 180156 29 100.0 32 ............................. GCATTTGTCGCAGTAATATTCCTCACGACGAT 180217 29 100.0 32 ............................. CCCGCGAGGGATTTTTTTATGCCCGGAGTAAA 180278 29 100.0 32 ............................. CCTGTACCTCTCCTGTAAATGTTCCGCTAGTT 180339 29 100.0 32 ............................. TTTACGGTATTCGTTGTCAGCAATCCTGATCA 180400 29 100.0 32 ............................. CAGCTGCTTCGCACCTGCCGGGCTACGCCGAA 180461 29 100.0 32 ............................. CTTTCTTTAACGTCCAGTCATTCCTTGAGAAC 180522 29 100.0 32 ............................. CGTCCTGGTACGTCGGCGTGAACCCTGCCGCA 180583 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCGTCTGTGCCG 180644 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 180705 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 180766 29 100.0 32 ............................. TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 180827 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 180888 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 180949 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA 181010 29 100.0 32 ............................. GTTACAGTATCATGTAAAACTGTATAAAAACA 181071 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 181132 29 96.6 0 A............................ | A [181158] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //