Array 1 98069-100293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTW010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CMCC 50115 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98069 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98130 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98191 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98252 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98313 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98374 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98435 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98496 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98557 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98618 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98679 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98740 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98801 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98862 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98923 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98984 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 99045 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99106 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 99167 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99228 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99289 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99350 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99411 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99472 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99533 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99594 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99655 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99717 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99778 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99839 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99900 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99961 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 100022 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 100083 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 100144 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 100205 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 100266 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116426-117780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTW010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CMCC 50115 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116426 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116487 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116548 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116609 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116671 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116732 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116793 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116854 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116915 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116976 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 117037 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 117098 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 117159 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 117220 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117282 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117385 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117446 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117507 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117568 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117629 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117690 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117751 29 96.6 0 A............................ | A [117777] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //