Array 1 3428257-3429064 **** Predicted by CRISPRDetect 2.4 *** >NZ_LORR02000011.1 Citrobacter koseri strain FDAARGOS_164 unitig_12_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3428257 28 100.0 32 ............................ GCTCGCGCACTCGGCCTGCGCGCCTACATCGA 3428317 28 100.0 32 ............................ GTTGGTGATGACTTACTGGTCGCGCTTTTGTT 3428377 28 100.0 32 ............................ GTAAATGGATGTCCAGAGGCGAGCAAATACAT 3428437 28 100.0 32 ............................ GAATGGATACGATGGAATAACCCTGGACTACA 3428497 28 100.0 32 ............................ GTATCCAGTTTGAATGAGTGTTGGGACAACTA 3428557 28 100.0 32 ............................ ATCAGATGTGCAGCAACAACCGTATGATGATC 3428617 28 100.0 32 ............................ AGGTGCCGCAGGGGTATATGTAACACTGGTGC 3428677 28 100.0 32 ............................ AATAGCAGAACCCCATCCCATAGTTTTTACTC 3428737 28 100.0 32 ............................ GCAACTTTCGTAAACATGCTCGGCAGCACAAA 3428797 28 100.0 32 ............................ GAACACGTCATCGTTAGGATTATCACCTACAC 3428857 28 100.0 32 ............................ ATCACCTGAACCACACACGCAAATATATGAAC 3428917 28 100.0 32 ............................ GAAATTAAAATCGTAGTCAAAACGCTGTGGAA 3428977 28 100.0 32 ............................ ACATGGGCATTCCATTATCGCCGACTTTTCTT 3429037 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATCAGAAAGGCGTCTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCAGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGCTGGCAAACGAGCTGCTGTTCGGTTCACTGGTTGGCGGTGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCTGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTTGCCGCCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : ACCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCGGAGCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCGGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTCGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGGCCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3440448-3440835 **** Predicted by CRISPRDetect 2.4 *** >NZ_LORR02000011.1 Citrobacter koseri strain FDAARGOS_164 unitig_12_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3440448 28 100.0 32 ............................ ACCTCCGCCAATGCCATTTCTCAGCACATCCA 3440508 28 100.0 32 ............................ AGTCTGAGAAAACAATGGTAGAGGCTTTTGCT 3440568 28 100.0 32 ............................ AGTCAGCAAAATACCGCCAGGCTGATGTTGCA 3440628 28 100.0 32 ............................ AGGACGATATCGGTAGCCGCTGAGATTCAGCG 3440688 28 100.0 32 ............................ TACCATCGCAATCGCCGTTGCAAATGCCGCAT 3440748 28 100.0 32 ............................ AATCAAAATCCCATCAACAACACGTTCCTGGC 3440808 28 82.1 0 ...........C........T.C..T.T | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCGCAGGGCGCGCGCGCTGAAGTTCACTTTACACCGCGTTTGATCACTACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTTCCGTCCCGCCGTGGATTGTTGCCGTCCGTACGCGCACTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATACACCCTTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATATAACTTGGGTGAAAAAGGGTCTGACAGGAAGACGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTTAATGTAGAAGGAAGGGAAGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCAC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //