Array 1 128207-128721 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIVL01000013.1 Klebsiella quasipneumoniae strain WUSM_KQ_89 NODE_13_length_150331_cov_30.3421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 128207 28 100.0 33 ............................ TAAATTTTTCCCGGCCATTCCGCTGCGCTTCAT 128268 28 100.0 33 ............................ TGAATGTTGCGCACAAAACCGTCAGTCCGGAGG 128329 28 100.0 33 ............................ TACCAGGCTAAACCGCGCCCGCTTGATAAACCT 128390 28 89.3 33 ......................G.GG.. CAGATCCAGTCTCGTCAGGCTAAAGTGGCAATG 128451 28 100.0 33 ............................ CGACGAAGGCGCATATTCTGACACGGTTGTGCG 128512 28 100.0 33 ............................ CAATGCCCAGGCTTTCTGGTCCATCACAGCGAT 128573 28 100.0 33 ............................ CATGCTCGCGCAGCGCCACACCATCAGTTATGA 128634 28 96.4 33 ...........A................ CGCAGAAAGCACGCTGGCTTCTGCTATCAGCGC 128695 27 92.9 0 ............A....-.......... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACGTGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCGGCGCAGGATAACAGTCTCCAGTTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGCGACGACTTTCCGCTACGCGCCTACGGAACCGCGCTGCGCGATGCTGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCGTCAGGTTATAACGCTACGCTATGGGATGACAAAAGCACTTTGCGTCCGGCTATGGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCATCAGCCAGTCGACGGTGGTGACATTGAGACAATCTTGTCCGCTGGATGAATGTTGAAGCTGACGCGAAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATAAGCTGCTAAACACAATATGCTGGT # Right flank : CTCGTGACCGTTTATCTGATGCAGACGCATCAATGCGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTTCACTTATAAATATTCGTGAACTATGTTTGTTTTATACTTTCTAAAATGACGTATAAAGCGTTAGGCTTTATGACTCATCTGGAGATATCGCTCTTCCTATTAATTATTTTTAATTTTTTATATTATTATTTTGGGTTTTTATAATAAATTCAGTCTGTTGTGTGTGCTTTTTTATTTTATAAAAAGTTATTTATAAATCCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTAACCAGGGTTTCGCTTCAAAATCAACATGCCACCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGGTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGGTGTTGAGCCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 137430-138251 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIVL01000013.1 Klebsiella quasipneumoniae strain WUSM_KQ_89 NODE_13_length_150331_cov_30.3421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 137430 28 96.4 33 .............G.............. TATAAGAGGCGTCAGCCTGGTTCTGAGACACCG 137491 28 96.4 33 .............G.............. CACTGGGGTAATAGGCTTTGCGCGACAGATGCG 137552 28 96.4 33 .............G.............. TACGGCTAAGCGCACGTGGTACAGCTGAAAATT 137613 28 100.0 33 ............................ CGTGCAGCCAGGCGAGGAAAAAACGTTGCCGCG 137674 28 100.0 33 ............................ TTTCTGCACCCTTGAGCATTTCAGCCAGCACCT 137735 28 100.0 33 ............................ CCATAGTTTGGCAAACTGCACCTGGGTGCTGAG 137796 28 100.0 33 ............................ TGAGCCAGCGCGCTGATGGGCTGTGGTTCTTAA 137857 28 100.0 33 ............................ TCAATCATTGTTGATGGAGATGACTACGGGCAG 137918 28 100.0 33 ............................ CGCGCTATCGTAAGAGTGCTCTGCAGTGAGTGC 137979 28 100.0 33 ............................ CACCGCAATGTCCTCCTCATCGAGCCCGCGATC 138040 28 100.0 33 ............................ TTAACTACGGGGCTTTCTGCTTTCTGCCACACA 138101 28 100.0 33 ............................ TACGACCAACAGCAATGTGGCCAAAAAGGCGGA 138162 28 92.9 33 ...........A.T.............. GGTCAAAACCGCGGCCCCGGCAACTCAACGGGA 138223 28 78.6 0 T......A....TC........C.C... | C [138244] ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATTTGCCGCCAGCGGTTCGTGGACGAATGAAGCTATGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTTCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAACTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAGTTGATGCTCTTTGACAATATGTTGGT # Right flank : CCGCTCAGCCTATCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAGTACCCGGCGTGGTAGTTGGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCCGCCTGCCAGAAGGCATCCACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTGTCCGCACTTTGATAGAGACACAAAGAGACATCGCCGCTGCCGGCCAGCTCTGCGCCGTAGGTCGGCTCGCCTTCATCGACCAGCGTTACGCCAAGCGGGGCCAGAGCCTGTAAAAAGAACGCTTTGCTGGCGGCATAGTCGCTGACGCCGAATTTCACATGATCGAACATCTCTTCTCTTCTCCTGTGGACGGGGTATCGCCAGCCGAACGCGTTAGCCGGGAAATAGATGCAAAATAGTTAACAACGGGAAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACGCGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //