Array 1 17929-14369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVZT010000111.1 Rhodopseudomonas palustris strain 4810 NODE_235_length_17946_cov_28.760215, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 17928 37 100.0 36 ..................................... CCACGCAGTGATAGACCGAACACCGCCGCGGGTGCG 17855 37 100.0 32 ..................................... GATAGGTCTGTCATTAGGTGCTTTGACAGTTG 17786 37 100.0 34 ..................................... TCGGTTGACGTCTCCCGCAACAGTGTCGGGCTAT 17715 37 100.0 34 ..................................... TGCGCAAATAGAGTATGCGCGTATTCGTGATATA 17644 37 100.0 37 ..................................... TTTCAACTGGCACTGGGTTAGGCGTGGTGGCAACAGT 17570 37 100.0 37 ..................................... AAGGGGATTGTTAATAAAACGGAGTTACTGCTAATGC 17496 37 100.0 38 ..................................... AGCGGGCTATTGCTATGAACTTGGGCGGTGGGTGCAAT 17421 37 100.0 37 ..................................... AATGACTGACTTTCCGTTGGTTGGTTGTTAAAGCGCG 17347 37 100.0 37 ..................................... TTACAAACCGGACCCGGCCTGACCAGACCTCGGCAAA 17273 37 100.0 35 ..................................... GTCGTTTCGTACATTTCCTGATCCTCGTTTGATGT 17201 37 100.0 37 ..................................... AATTAAAACCCAACCCAGCGCCACGCGCTAGACCAAA 17127 37 100.0 38 ..................................... ACATCATCACACCTTACTGTGATTAATAATAATACTTG 17052 37 100.0 35 ..................................... CCAGTATCGGGATCGACGGTACCGGCTGGTTTAGT 16980 37 100.0 35 ..................................... CCGACTTGTATCAGCATCTGCCACCTAATGTCAGG 16908 37 100.0 37 ..................................... GTGATTTTGATAGGGTATGGCTCAATCGCCTTGTTGA 16834 37 100.0 38 ..................................... GTTTTATGCGGGAACATGTAAAAGGGTTTTATAGGTTT 16759 37 100.0 37 ..................................... TTGAGGCGGTCAAACACAGTGGCGCACAAGGCGGCGG 16685 37 100.0 33 ..................................... GTAAGCCGACTTACCGTCAAGCGAAGGGAGTGG 16615 37 100.0 38 ..................................... TCCAAATCCAATTTCTGACTGAACACTCATACGCCAGC 16540 37 100.0 38 ..................................... CTGTTTTGCACAGACCCTAACCGCCGCGCCCGCCACAG 16465 37 100.0 37 ..................................... CCCAACGCACTGCCTATAACGCGGCGGGCTGGCGACA 16391 37 100.0 37 ..................................... GGCGGCTTAAACCGCAATATGAGCGGCGCTCGGCAAT 16317 37 100.0 37 ..................................... ACGCCGATTGTCGCGGCGTATTTTCATGCCAAGCAAT 16243 37 100.0 37 ..................................... ACCCATAAGTCATCATCGCCATCATCGCCGTCATGTT 16169 37 100.0 37 ..................................... TAATCTAAAAACTGGAGTTTCGGATTTTTTGGAATCT 16095 37 100.0 37 ..................................... CGGGCATTTCTATTGCGGGCATTTCAACAATCATGTC 16021 37 100.0 35 ..................................... AATGATGTGTTTATTCGCAATGTACAAATGGCTAT 15949 37 100.0 37 ..................................... AAACCAGTCGTTCGGCAATACGAATCGCAGCAAGCGC 15875 37 100.0 37 ..................................... TTTCCTCTGCGCCAGCAATAATACGGGCAATTTCACT 15801 37 100.0 38 ..................................... ATCATTTCCTCCAGCAAGTTTCCTAAAACCATGGCAAT 15726 37 100.0 35 ..................................... ATTCTCCGTTTTAAGCCATTAAAGGGTTATTGGTT 15654 37 100.0 39 ..................................... GCTTTCTGTAATGTCGAGTTTTTAATGTTTTTTGCAATC 15578 37 100.0 37 ..................................... GGAATAGCTTATCACTTCTGTTTACGCGTTGCAAGCA 15504 37 100.0 35 ..................................... ATCAGTGCCGCACACGGAACTGGAAAAACTCAGTC 15432 37 100.0 33 ..................................... AATGATTCTGAGTAGTACTCGCGGGAAGTGCCG 15362 37 100.0 38 ..................................... CCTGTCACGACTGTGCGCGACACTCTGTACAGTGACGC 15287 37 100.0 37 ..................................... GTGGAGAGCTCGATGATACAGCAGCTCGATATGCACT 15213 37 100.0 36 ..................................... ATAACCGCACTCAACGATGGAATAGACAATCTTTCT 15140 37 100.0 37 ..................................... CCCGAACCGCTGAATACATCTGCAATAATGATGCGGT 15066 37 100.0 36 ..................................... CGTGCCGTGCGCAAATACCACAATTGCGGGCGCGTT 14993 37 100.0 37 ..................................... CTAATACGCAATATCGTATTAGCAAGCGAGCGCAATA 14919 37 100.0 35 ..................................... CGCAAATTCATCAGGTGTGAATGGCGTTATTTCCT 14847 37 100.0 37 ..................................... TTTTCTCCGTCCGTTCACACGGATGGCGAAAACGCAG 14773 37 100.0 37 ..................................... GTCCTGACTGCCAGCCTGGCTCTGACTGGCACAGTGT 14699 37 100.0 37 ..................................... TAATAGGAAAGTCTCTCATAGTCCCCGAGCGGGACTA 14625 37 100.0 35 ..................................... GATTGTGGGCGGATGAAATGCCGATCCCGCCGTGG 14553 37 100.0 37 ..................................... GCGAGCGAGCGCAATAATCGCAGCATCAATGTTGGGT 14479 37 100.0 37 ..................................... GCATCATAATCAGTTACGAAACCTTCGCTGCTGCGTG 14405 37 75.7 0 .........................G.C..AAATTGG | ========== ====== ====== ====== ===================================== ======================================= ================== 49 37 99.5 36 GTTGCAACCCATTATCCATTACAACAAGGATTGAAAC # Left flank : AGCATTAAAGAGTTCGC # Right flank : TATTTAGTGAGTATTAATTTGCGTCGCCAATTGCGCGACCGCGTGTGCCTCAAAATCCATTCCAACCAATTGATCGGGATTGAGTGAAATGGCAAAACCAATTCCGAAATGGTCAAGAATCCAGCGCAATGTCACCACCAATCCGCCGCCATAGCCGGGGAAATCGCGCACGAATGTTTTAGCGCGGTCGGGGCTGGTAAATAAAATTAACACCTTGCCGCCGTCATCTTGATTAATGGTTAATGGCTGCGCTCGCTGCGTAGTTTGTAATCCGCCAATGGTGTGCTGGTCATAAATCGGCATGAATACGTCCGACTCAATTAAAAACTGAATCAACGCCTCGGGCGCTATTTCGCCATTCTGCGCCGCGAGTAATTGCCGTTCTAATTCGTTTTGCGGGTGAAAATCAGCCGTTGTCATAAGTGTATTTCCAGTGGTTTTTTTGTGATTCAAGTCATAATTCATTGCGGGGTTGGATTGCGTATTCATTATTCACACAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCCATTATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 4978-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVZT010000001.1 Rhodopseudomonas palustris strain 4810 NODE_6_length_125435_cov_36.170011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================== ================== 4977 37 97.3 222 ....................................A ACAAACCGCCAAAGTGTAAAATTTGCTGACAGAAAATTATTTTGGTGGCGCGGCTGAAGTGCTGTAAATGATTGTTTTTAGTGAGAAAAAAAGCACTTTCAAACGTCAAAATTTGGGTCAAAATATGCCGTTTTTCGCAAAATTTCGGTCAAAAATGCCAAAAAGGAGGTCAGAAAATTTTTTGTATTTGCTTGAATTTTGTAGGTTTTTGCCAAAAATGCG C [4943] 4717 37 100.0 35 ..................................... ATGCTGCGACGTTTTTATTAAGTGCGCTGTGAATT 4645 37 100.0 35 ..................................... CTACATAACCTGATACTGACCGTTCGCTTTTTCTG 4573 37 100.0 37 ..................................... CCTGGACATGAACGCTGCGGCAACCACATATCCAGAG 4499 37 100.0 35 ..................................... ATAAAGTCATCTTCGTACTGTTCAAAATCACCGCC 4427 37 100.0 36 ..................................... GCTCATTCCATGCAATGGAAAGTGCCGCATTTTTTA 4354 37 100.0 34 ..................................... ATGGACGCGATCTGGAATAGCCGCGGGCTAACCG 4283 37 100.0 35 ..................................... TCCGGCTGCTGCCGCGCAATCAACCTCGCGGGCGG 4211 37 100.0 37 ..................................... ATGGCCGCGCCTTTATCTCTGGCTCCAATACTGGAAC 4137 37 100.0 37 ..................................... CCCGCCCACCCGCCTGGAAGTGATGGCGTGGCATTCA 4063 37 100.0 37 ..................................... TCCACTTGTCGTCGGTTGGATGGAACAGTACTAAATT 3989 37 100.0 36 ..................................... CAATATGACTACAGAAATTCAATTAATCGGTGGGAT 3916 37 100.0 33 ..................................... AAGCATCGATCATAGGATCGTTCAAGGCTAAAT 3846 37 100.0 38 ..................................... GCAACCGCGTCAAAAGATCGCACGGGCATCTTTGACGG 3771 37 100.0 37 ..................................... CTGCTAAAACAGTGCGTGTCGAAGATAATGCTGTTTG 3697 37 100.0 37 ..................................... GATTCGACGGTCAGCCAATCGCCGCTGTCAGCGCACA 3623 37 100.0 34 ..................................... CGCTGTCATTAAAAAACTCCAATTACCAATCGAG 3552 37 100.0 36 ..................................... CAACGGTGGGTATGTCATTAGCCATTTTGACGCTAA 3479 37 100.0 37 ..................................... AGAGCTAACTCAATCAATTCGCCTTGATTGTGGCAAC 3405 37 100.0 35 ..................................... TGCACCCTCTATGGTGAAAGTTAAAGTTAAAAGAA 3333 37 100.0 36 ..................................... ACTGGTATCATCTAAGTTAAGTTCGATCATGGTATT 3260 37 100.0 37 ..................................... GTTGGATTGACCTCAGTAACGGCGCACGGAACTCGAG 3186 37 100.0 36 ..................................... CAATGCACAAGCGGGCAATGGCGGCTATTAAAAACG 3113 37 100.0 38 ..................................... ATGACAATACCGCGTCAAGTTGACGCATTAGCTTTTTG 3038 37 100.0 37 ..................................... GGTGTTCTAAACCGACAGCCCGGATCATCATTCCACT 2964 37 100.0 37 ..................................... ATGTGTTTTGCTGCGCGAACACGCCGTGACATTTGCA 2890 37 100.0 36 ..................................... TGGCCGCCCTTGTGGCCGCCTGACCGCGCATATCGT 2817 37 100.0 37 ..................................... TTCACCAGTAGCGACGGTATAGAAACGAATGATTGCC 2743 37 100.0 37 ..................................... AACGCCGGAAACGGCACGGAGTCTCTCTCATGTTACG 2669 37 100.0 35 ..................................... AGCAATTCTAGTGCCAAAATGCCGTCCTCGGCATT 2597 37 100.0 38 ..................................... GCGGCACGATCATTTTTTTCCTTGGCGCCGCATGCAAT 2522 37 100.0 37 ..................................... AACCATGTCAAGTGCGTCCATGGCTTGCATACACCGA 2448 37 100.0 37 ..................................... TCCAAATCCAATTTCTGACTGAACACTCATACGCAAG 2374 37 100.0 37 ..................................... GTCAACTCAATTGACTTAGCAGTCGCCATTCCCTCGG 2300 37 100.0 36 ..................................... TTCTTTAGTAAGGCTACATAATCCTCCTCTTCTATG 2227 37 100.0 36 ..................................... ATACGAACACGAAGTGTGTCGCCGCCGATGGTGACT 2154 37 100.0 37 ..................................... CAACAAGCGATTAAATCTTCGCCATTGGGATCAATGA 2080 37 100.0 36 ..................................... GCGAGTGGAGTATCAACGATTTTATTGAACGAATAA 2007 37 100.0 35 ..................................... TGGGATTGGAATTGGAATTACGCGGTTATTTGTGT 1935 37 100.0 30 ..................................... CCGTCAGGCCCGTGGCTTTGTATGTGACAG 1868 37 100.0 37 ..................................... GCCATCAGCGCGACTGCGCCTAGGTTGCCCATGTCTT 1794 37 100.0 35 ..................................... CTTGGCACATCCCATCTGTCAGCCAATAAATTAGA 1722 37 100.0 37 ..................................... CGGTACGAGGCACTAACAGCTGACGCCGATGTCTATA 1648 37 100.0 34 ..................................... CAGCCATCAGCTTCATAATATAGAAGCAAGTGTT 1577 37 100.0 35 ..................................... CTTGCACGGCGCGGCGTGACCACGGATTATTTCTG 1505 37 100.0 35 ..................................... CCGCGTCATAGCTCGCCATCGGGCGGCCGTGTTGA 1433 37 100.0 37 ..................................... TGGGATCACTCAAGGTGCGTTGTTTCGTGGTATCAGC 1359 37 100.0 38 ..................................... TTGGTCAGACTTTTAGTCCGGCACGACGTTTAGCAATT 1284 37 100.0 36 ..................................... CTGCACACCACGTCCATTGGTGGGTGACGCGACCGA 1211 37 100.0 35 ..................................... TAGACAGCGCTATCTATGGGAGAGATGTAATACCG 1139 37 100.0 36 ..................................... TGTTCAACAAACTCAACGTTGTTTTCAATACGAACA 1066 37 100.0 34 ..................................... TCAATGTATAGCAGTCAGGTTGTAACGCCATTGC 995 37 100.0 37 ..................................... GTCGTAATGAGTTCCAATACAGCGCCTTCATCCGCCC 921 37 100.0 35 ..................................... TTTGGTTGTCCTATCCTTCCCAACGTGAGCGTCGT 849 37 100.0 36 ..................................... TCACCTGTATTGCGCTTTACATTGCTTGACGTTGTA 776 37 100.0 36 ..................................... GCCGTTATAAAAGCGTCAAACAGCGGGTTTTGAATG 703 37 100.0 36 ..................................... ATGATAATCCGTCTCTGTGGCGTCCACGCTTTACTG 630 37 100.0 35 ..................................... TCCGCTAGTGCGGTTGTTTTATTATCGTTCCGTAT 558 37 100.0 36 ..................................... GTAAAATCCGCATCCGCTAGTGCGGATGTTTTATTA 485 37 100.0 36 ..................................... AACCGCGTAACGGCAAGTCATTTAGCGTTCAAGAAT 412 37 100.0 37 ..................................... ACGTACCATTCGAGCCGGTGTAAAAGCATTCAACACC 338 37 100.0 37 ..................................... TAAGATAGCTTGAATTAAAGATTGTATTAATGCCTGC 264 37 100.0 37 ..................................... CAGTACCATCTTGGACGAATCCCTGATGTTCCGAATT 190 37 100.0 35 ..................................... ATGGCAGTCGGGAGTGCAGGAATACAATACCCGTT 118 37 100.0 35 ..................................... ATCGCTTCGTGATGAGATCGACAAGCTCGGCATGG 46 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================== ================== 66 37 100.0 39 GTTGCAACCCAATATCCATTACAACAAGGATTGAAAC # Left flank : CGGGGATGTTGGTGGCGCGGGTAGCGACGACGGCGGATGAGGTGGCGGCGCTGTGGAAGACGCGCAAAGCGTTGTCACCGGCGCTGCGGCATGTGGCGCCGAAGAAGATTAATGAGGATGTGGTGGTGCCGGTGGCGCAGATGGCGCAGTTTGTCGAGCGGTTGGCGGCGCTGGGGCGGGAGTGGGGTATTCGGATCGTGACCTTTGGTCATGCCGGTAATGGCAATATTCATGTCAATGTGCTGCCGGCGGCGGAATATGAATTCGCACGGGCGCGGGAGTGTGTGAGTGCGATTTTTAATACGGTCATTGAATTAGGCGGTACGCTGTCGGGTGAACATGGCGTGGGAATTGAGAAGCGCGAGTTTATTGATCGGGAATTGACGCCGGCCGCAGTGGAGATGATGTGGAAAATCAAACAGCAATTCGATCCGCGGGGGATTTTGAATTGCGGGAAGACGTTGCCAATGTCGGAAGAGATGCGGTAGAATCCTGACGCA # Right flank : CCACATTATC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCCAATATCCATTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 1 12982-10104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVZT010000060.1 Rhodopseudomonas palustris strain 4810 NODE_157_length_28092_cov_5.832436, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 12981 32 100.0 33 ................................ TCAAATACGGCAGCGCGGTCGATCTGACCTCGC 12916 32 100.0 34 ................................ ACCTCGACGGACGGCGCCTGGTTCCAGGGTGACA 12850 32 100.0 33 ................................ GAGAAGTTTGCCGAAGAGAACCCGCGACTGATG 12785 32 100.0 34 ................................ GTCGTCGCGATCGGCGGCGGCGTTGCAGCGGCCG 12719 32 100.0 34 ................................ ACCATCGGGCTTGATCTCGAAGCGATTCGAAGTC 12653 32 100.0 33 ................................ AACATCCCTGACGCCTACGCCGTTTATGTCGTC 12588 32 100.0 34 ................................ GGTTCCTACACCGCGGACGATCCCGAGGTGCACT 12522 32 100.0 34 ................................ ACCGTCAAGAACGGCACGCTGATCTTCGCCGAGA 12456 32 100.0 34 ................................ TCGGCAATGGCGGCGATCTCATCAGCGGCCGCTT 12390 32 100.0 35 ................................ GTAAAACTAAGCGCCGACGTGATATCGTGCCACGC 12323 32 100.0 34 ................................ ATTGCCGCAGCGACCAGCTGCGGCGGCTGCGCGA 12257 32 100.0 35 ................................ CACTATGCGCCGGGGGGCAACGCGGCGGCGCGCGC 12190 32 100.0 33 ................................ AAAGCCGCGTAGGCGCGGCTAGCCGGAAATCCG 12125 32 100.0 35 ................................ TTTGCCATCACGCCTATTAAAAACCGGACGGGCGG 12058 32 100.0 35 ................................ GCGCTTGCCATCAGCCGAGCGCCTGGATGGTGGCC 11991 32 100.0 33 ................................ AAGTTTAACGGCTCAACCGCGGTAGCCGGCCTT 11926 32 100.0 37 ................................ AGCCGAAAGAACCCGGCGGACAGACAGGTCGCAAATG 11857 32 100.0 33 ................................ GCGACATCAGCCTGCACCTCTGCGGCGCGCGTT 11792 32 100.0 34 ................................ GATGACACCCTCGACATCCGAGCGCTCTTTCTGC 11726 32 100.0 35 ................................ CCGGTAGCGGATGCCTTCCTTCATCTTGATGACTT 11659 32 100.0 34 ................................ GTTGCGAATCATCTCCAGAGCCGCCTTGGCGTGC 11593 32 100.0 35 ................................ AGCAGGGCTGGGGTTTCGGCGCATGGGCGCTGCTG 11526 32 100.0 34 ................................ CTTGCGGTCTGCTTCGCCACGCCGCATCAGCCAG 11460 32 100.0 34 ................................ ATCTTTTCGAGGGCAGCCGTCACCCCCTCATTGA 11394 32 100.0 33 ................................ CAGTTTAACGGCTCAACCGCGGTAGCCGGCCTT 11329 32 100.0 33 ................................ AAGGCAAAGCTAGATTATTTCAGGAGTGTCAGA 11264 32 100.0 35 ................................ GGCGAAGGTACAGGAACTTCGAACTAAGCAGGACG 11197 32 100.0 35 ................................ ATCACCAGTCGCGAAACGATGACTGACCTTGTCGG 11130 32 100.0 35 ................................ ACGTCCGTGTCGGCCCCCGGGTCCTTCGCGCGCAA 11063 32 100.0 35 ................................ TTTTCGAGCGCGTCGGCGATACGCTGTCGCTGGTG 10996 32 96.9 34 .....C.......................... GTTGCCGGCGACGTGCTGAAGGTGATCAGGCCGA 10930 32 100.0 35 ................................ ATGTATCGCGATCGCCGATCGGGCCGGAGACGTGA 10863 32 100.0 35 ................................ AGTTACCAACGCGGCCCGTCGGCGGCCAGCGCGTC 10796 32 100.0 34 ................................ CGATATGCCGCGCTACCTGCTGCGCAACTGCACT 10730 32 100.0 35 ................................ GGGCATCGGGAGCGCCGCGATGCGCTTGGCCTCCG 10663 32 100.0 34 ................................ CTCTACCGCGGCCTTTATGATCTTGAGACGTTGT 10597 32 100.0 33 ................................ ACCTTCGCCGTGAACAGGTTGGGAAAGGACAGC 10532 32 100.0 36 ................................ AACTATCCGAACGCGACCGCGCAACAGGAAGCGATC 10464 32 100.0 33 ................................ TTGGAGCCAACAATCTTCACGCCGAACGGGGTC 10399 32 100.0 33 ................................ TCGGCCAAGCTCGCGGCGCTGTCCCGCGGCGCC 10334 32 100.0 36 ................................ AACGGTAGATGGTATCGTTAAAGCTGACCCCGGAAC 10266 32 96.9 33 ...............................T ACCTCGGCGACATCCGGCGACGCCGCCTGCGCG 10201 32 96.9 34 ................A............... CAATGCGCATCGGCCGCGGCGGCGGTTCGTTCCT 10135 32 93.8 0 ........................G...G... | ========== ====== ====== ====== ================================ ===================================== ================== 44 32 99.6 34 GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Left flank : GCCGAACGCGAAGCAAGAGGCCTGCGATGCTCGTCCTAGTGACCTACGACGTCCGTACCAGCGAACCCGGCGGTCAAGCACGGTTGCGGCGCGTCGCCCGGGCGTGCCAGGACTATGGCCAGCGCGTGCAGTATTCCGTGTTCGAGATCGAAGTCGATCCCGCGCAATGGACCGCGCTGCGATCCCGGCTGGAAAGTCTGATCTCGCCGAAGCACGACAGCCTTCGATACTACTTCCTCGGCTCCAATTGGCGCCGACGCGTCGAACATGTGGGCGCCAAGCCGGCAACGGATTTCGGCGAACCGCTGATCGTCTGATCTGGAGCGCGAACCCAGAGCGCACGCGCAGGAGCCGGAACCTTCGCACCGGACTAAACCGCCGTGATTCAAGATGCTTATGCGGCCAGCGGCATTTCACGACGTGGTGCGCCTGGCCAAAAGCTGACGTTCGCGCAAACCGTGCGATTTCACGTGGCGTTGCAATCGGCTATTGCTACTGAC # Right flank : TACTGGACGGTGCATGCCGGCGTGATGCGATACAATCTGACGGGGACGGAATGCCGGAGAGGGAATGATGCGGGCGTGGGGAGCGTCTGTCCTCGGCCGAAGGCCGCTGAAGTCCTGCGATCGCTCGCAAAGGAGATCGTGCTGACGCGCAGGATGACGAATTGAAGATCGATCTCCGACGCGATATCGCTGGAATCCTTGCGATTTCCCTCAAAACGAAAACCCCGGCCACTGGGACCGGGGTTTCGCAAGTCAACTTGGTTGCGGGGATAGGATTTGAACCTATGACCTTCAGGTTATGAGCCTGACGAGCTACCGGGCTGCTCCACCCCGCGATAAACTTTTGCGCGGCTTTTCAGAAAACCAAAGTGAACGGTCAACGCCGTGGGGCGCTGATCGATCCTCCCGGAAGGTTCCTGAGAAGGCTGCCCGTGGGCTGATGCCCGGGGCGCGAGGGGTGTGTACCAATGCCCGGGGGGTTTGGGAAGGCCCGTGACGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //