Array 1 979636-981128 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050728.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979636 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 979697 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 979758 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 979819 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 979880 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 979941 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980002 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980063 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980124 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980185 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980246 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980307 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980368 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980429 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980490 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980551 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980613 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 980674 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 980735 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 980796 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 980857 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 980918 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 980979 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981040 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981101 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997260-999224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050728.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 997260 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997321 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997382 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997443 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997504 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997565 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997626 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 997688 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 997749 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 997810 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 997871 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 997932 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 997993 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998054 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998115 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998176 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998237 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998298 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998359 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998420 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998481 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998543 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 998604 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [998646] 998646 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 998707 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 998768 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 998829 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 998890 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 998951 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999012 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999073 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999134 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999195 29 96.6 0 A............................ | A [999221] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //