Array 1 39837-45413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHZV010000007.1 Novosphingobium sp. BK336 Ga0365276_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================== ================== 39837 32 100.0 34 ................................ ACCACGATCTCGGCCAGCGAGTGGGAGTCGAGCC 39903 32 100.0 35 ................................ GTGGCTCCAGCGCCGCCAGAACGCCGCCAAGCGCG 39970 32 100.0 35 ................................ CCTGCTGGCCTGGGCGTCGTCGTCGGCGCTGTGTC 40037 32 100.0 35 ................................ ATCATCAGTGAGACGGGCCATAATCAGGCGTGTGG 40104 32 100.0 34 ................................ AGCCCCTGACCCTAACAACCTTGCCTTGCACCCC 40170 32 100.0 34 ................................ GTCTATGTGGCGCTCGCCGCAAACCGGACAGGTA 40236 32 100.0 33 ................................ GGCGCACAGGCGGTGGATCCAGTCACCCATGGC 40301 32 100.0 35 ................................ CTCAACCCGCCCGCCACCGAAGAGGTCGCGGGCGT 40368 32 100.0 35 ................................ GTCACGCCGTGCTGGCCGTTCCCACGCTACGACTT 40435 32 100.0 35 ................................ CGGCTGGATCCGGCGTGCAGCAAGTGGGCGCCCTC 40502 32 100.0 34 ................................ GGTGAACTGGGTGCCGACATAGCCGACCTGCACG 40568 32 100.0 34 ................................ CCGTTCTACACGCTGCCGTTGTCTGCCCAGGTGA 40634 32 100.0 33 ................................ GATTACGAAGCGCCCGAAACCACCACCATGACG 40699 32 100.0 35 ................................ CGCGACCTGGCGACATGCCGCGCACCAGACGGCCC 40766 32 100.0 35 ................................ ATAGAGCATGGCAATCGCCCCGTCGGCATCTTCGT 40833 32 100.0 34 ................................ ACCTCGTCAATCACCGCGCTATAGTCGTCGTCGT 40899 32 100.0 34 ................................ TTCAAGGCGTTGCCCAACTATATGTTCGACCCGC 40965 32 100.0 34 ................................ GTGTCCGGGATCGTGGACGCTGCCGCCGCGCGAG 41031 32 100.0 34 ................................ GTTGCGGGGGAGCTGGGGCAACCTTCCCCACCCC 41097 32 100.0 35 ................................ CTGGTGTCGGGCAGCATCGGAATCGAGGCCAAGGT 41164 32 100.0 34 ................................ GAGGGCAAATGCGCCTATTGCCCAAACGATGCCA 41230 32 100.0 35 ................................ ACGACATAACTGGGGGAGACCAGGCCTATCGTTTT 41297 32 100.0 36 ................................ AGCTTTCAGCCCGACCGCTGGCTGGGCGACGTGGCC 41365 32 100.0 35 ................................ ACTTGCGAGGCAAAAGGTTCTGCGCGCGTCACCTT 41432 32 100.0 34 ................................ CACTTTTGATGGGGCTGCGTTTCGGCAAGCGGCA 41498 32 100.0 34 ................................ GGATAAAGGGACAAGGCGGCGTTTGGCCGTCATC 41564 32 100.0 34 ................................ AAGAACAATATGCGGTTTAGCGGCATCCTCTCGA 41630 32 100.0 34 ................................ GACGATCAGCGCATGCGCGGCGATGTGATCGAGT 41696 32 100.0 35 ................................ TGGGAGAAGCGGGCCGATCCGGTCATCACCCTGGA 41763 32 100.0 35 ................................ TGCGATTACCCAGCGCGTGGAGAATTTCGAGCAGC 41830 32 100.0 34 ................................ TTCATTGGCTTGGGCGTCGGCCACGATGCGCTCA 41896 32 100.0 35 ................................ ATCGAAATCGACGAGGACAACAACGTCTCGATAAA 41963 32 100.0 35 ................................ GGCAAGACCGTCGCGATCACGTCTGGCCTGACGCC 42030 32 100.0 34 ................................ TTGGCGTCCTGCGTGATCGCGGGGCGGCCGGCGC 42096 32 100.0 35 ................................ ACGCGCAGTGATTGCAGGGATACGGCGCGATGGCG 42163 32 100.0 34 ................................ ACGGCGTGGTGTTGCGCGGGCCTGGTCTGCGCGG 42229 32 100.0 35 ................................ AGCGCGTCGTCAATGCGCTGCCACAGATCGGGGCG 42296 32 100.0 34 ................................ CTGTTGCTCACACCCGCACCCCCGACCCCCTGCT 42362 32 100.0 36 ................................ ATCGTCGGGTTGGCGATCAGGAATGCCACGAAGGCA 42430 32 100.0 35 ................................ TCCCGCTCCGCGTAGGCCTGTGTGAGGGACGCCAT 42497 32 100.0 34 ................................ CTGTGCAGGAAAAAGGTGGGAATAGTCGGGGTAA 42563 32 100.0 35 ................................ GTCACGCCGTGCTGGCCGTTCCCACGCTACGACTT 42630 32 100.0 35 ................................ CCGCTGGATCCGGCGTGCAGCAAGTGGGCGCCCTC 42697 32 100.0 34 ................................ GGTGAACTGGGTGCCGACATAGCCGACCTGCACG 42763 32 100.0 34 ................................ CCGTTCTACACGCTGCCGTTGTCTGCCCAGGTGA 42829 32 100.0 33 ................................ GATTACGAAGCGCCCGAAACCACCACCATGACG 42894 32 100.0 35 ................................ CGCGACCTGGCGACATGCCGCGCACCAGACGGCCC 42961 32 100.0 35 ................................ ATAGAGCATGGCAATCGCCCCGTCGGCATCTTCGT 43028 32 100.0 34 ................................ ACCTCGTCAATCACCGCGCTATAGTCGTCGTCGT 43094 32 100.0 34 ................................ TTCAAGGCGTTGCCCAACTATATGTTCGACCCGC 43160 32 100.0 34 ................................ GTGTCCGGGATCGTGGACGCTGCCGCCGCGCGAG 43226 32 100.0 34 ................................ TCGTACATCGTAAAGCCCCCAGCCCAGCAGGATC 43292 32 100.0 35 ................................ GCGCCCGAAAGGCTGCGCAAGTGGAGCGAGAACAA 43359 32 100.0 35 ................................ TACCGCGTGCAGGTGGAAGACTTGACGATTACCGG 43426 32 100.0 34 ................................ CGCCACATGATTGCCGCCGCGCCCCGCGCCCGGC 43492 32 100.0 34 ................................ AAATTGAGTTGCAGCGCTCACTGCTGGGGGAAGT 43558 32 100.0 33 ................................ GTGGCCAGGGGCTGAACGATCTCGAAATCAATC 43623 32 100.0 35 ................................ TTCGGACAAGACGCCGCGAACCGCAGCATCAATTG 43690 32 100.0 35 ................................ ACGCTCAACACGGGCGTGGTTGATCCCCTCACGCA 43757 32 100.0 33 ................................ CATTTTCGACGATCGGCATAATTGGGTGAGGGC 43822 32 100.0 33 ................................ TGCAACTCAACTGGTTGCTGAAAAGTTGGCAAG 43887 32 100.0 34 ................................ TGATCCGATTGCACGGCGCCTTGTATCACGTCCG 43953 32 100.0 35 ................................ ACGCAATTTGTGGCGGCGTTTGAAATGGTGGGGAG 44020 32 100.0 34 ................................ TTACTATCCGGGGTTATGCGGGTCCGAACGATAC 44086 32 100.0 34 ................................ GTCAGCCAGCGTTGTGCGCGCGGCCTGAGTGGCT 44152 32 100.0 34 ................................ AGAAATGGGTTCGTCCGCTGCCGCGTGCCAAAGT 44218 32 100.0 35 ................................ AACGGCAACGGAGAAGTTGCACACTTGATCGTCGT 44285 32 100.0 34 ................................ TGCGCCCAATGCAGGCGAGCGTTCGGGCTCAGTC 44351 32 100.0 34 ................................ GGGATGTGGAGCATTTAGGCCTCCACCGGTTCGG 44417 32 100.0 35 ................................ TCACACCTCAAACGCCCAACGAGGCAGCATGACCG 44484 32 100.0 34 ................................ GAGCGACTGGCGCGCGCCAAACGTGCGCTGATGC 44550 32 100.0 33 ................................ TGCCTGATGCTGAGCCCGAGGGCGTCAAGCCCA 44615 32 100.0 34 ................................ CACATCCTGCGTGGCCTGGCCGAAGTGTTCTGCG 44681 32 100.0 68 ................................ ACCGCGCCCGATCGCGGGCTTACCATCCGCAAGTGTCGCCCCCTACCGACAATGCCCTGGCGAGCCTC 44781 32 100.0 33 ................................ CCGCAACGGCGTCTCGTCGTGCTCAAGGACTAC 44846 32 100.0 34 ................................ CAGCGCCTCGACGTGGTTGCGCAGGCGATCATCA 44912 32 100.0 35 ................................ ATTTGCAAGACCGTAGCGAATTTGCCGGCCATAAT 44979 32 100.0 35 ................................ GCGCGGGAGTATCAACGCCTGCATGCCAATTTCGC 45046 32 100.0 35 ................................ ATGCGCTTGATGCCGGCAACGAACCGGCTGATGCC 45113 32 100.0 36 ................................ CAGACCTGTGTCGAGGTGATCGATCCCGACCGGCTG 45181 32 100.0 36 ................................ GAGCAGTGGCAGCGCAGCCTTCTCAGCCTGCGCGCC 45249 32 100.0 35 ................................ ACAGGCTCGATCAGCGGGACGACCTTGACCGTCAC 45316 32 100.0 34 ................................ TGCGCATAGGCCAGCGCCCGGGCAGGGCCTTCAT 45382 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================================================== ================== 84 32 100.0 35 GTCGCCCCCTGCGCGGGGGCGTGGGTCGAAAC # Left flank : AGGCGATGCTGGTTTTGATCACCTATGACGTGAATACCCAAGACACGGCCGGCAAGCGCCGCTTGCGCCGCGTTGCCAAGGCATGCCAGGATTTTGGCCAGCGGGTGCAGAATTCGGTGTTCGAATGCGAAGTGAACCCGGCGCAATGGGCTGGTCTGAAAGCGGCGCTGGCCCGCGAAATCGCGCCGGAAAAAGACAGCCTGCGCTTCTACCAACTCGGCGCGGCTGGCAAGCGCCGGGTGGAACATATCGGCGCCAAGCCAGCACTCGACCTGGATGGGCCGCTGCTGTTTTGAAAGGCGGACGGGACAAGCTTGGGCATCGGCGCGAACCTCTAGCTGCCCGCAAAACACTGGCATGTTCGCGGAAGCGTAACTGCATGAAATATAGGAATGCGCCCGGTTTCCGCCAGTAGCAGGCTGTTTCGACGCTCCTGCGGTCGAGTGGTTCGCGGAACACGGGCATTTTCCTGTTCTTTGTCATCGTGTAACGCAAACCCA # Right flank : CTCCTCGGGTGGCGCTAGTAAGGGGATCGACCACCGTCGCTCGTCAAGGAGGTGGCCGCAACCGGCTGACCGGTCGTCTTTTGTGTGGGGCGCGAATCGAAACCGGTTCGTCTGCTGAAAACCACACCAGGGTAGAGCAGTCAGCCAGTCGTCGCCGCACCACTGCCGATGAGGCAGAGCGCAACAAGGCGGTCATCGACGAAAACTGACCCGTAATAGGAGCAAGTAGCCAAGAGCCTGCCCGGCGCCATTGGTTTTGCTACCCCGTTGATATCGTCGACTGCTGCATCGCATCAAGCCGCTGCGAAACGGAGGTGCCCTGTTTTTACTGTCAACCGCAAGCAGTTCGTCGTGAATCTCGAGCGTCACATCGATCTAAGGAATATTGGGGGTACAATTAGGGGTGTCACTAAACTGTCTATAAAAATTACAAATAAATTTAATTGTTTAAGTGGTTCTGAATTGCTACCCAGATCCTGCCCCCGCAACCATCTCTCAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTGCGCGGGGGCGTGGGTCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 470041-469647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHZV010000005.1 Novosphingobium sp. BK336 Ga0365276_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470040 29 100.0 32 ............................. CGAAGAAGCGGAGGCCTGACCATGGAACATCA 469979 29 100.0 32 ............................. ATCATGCGGCCGATCACGCCGGCGCCGCCGGT 469918 29 96.6 32 ..........T.................. GCATCCAGCAGTCGAGCGAATTCCTCTCCTCG 469857 29 100.0 32 ............................. TCGTCCGATCGGTGCAGCGGCGTCATGAAGAA 469796 29 89.7 32 ..........T...T.........A.... GGGGAAAGTCCGGCCTCGGGCATGGCGCGCAT 469735 28 89.7 32 ........-.........A.....A.... GCCTCCCGATGCGCCCGATAGTGATCGGCCAA 469675 29 72.4 0 .............CA.......C.ACATT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 92.6 32 GTCTCCCCCGCACACGCGGGGATAGTCCC # Left flank : CGTGGCCGAAGCGCGCGGGCAGCCGATCGAACGGGTGGTGCGCCAGCGCGCCGCGCGCCTGTTCCGCCAGCGCGGAATCATTCCCACGATGATCGACCAGATCAAGAGCCTGCTGGCCCAGGCGGACGAGGCCAGGCCCTGATGCCGCTGGTCGTGGTGATCACCCGCGACGTGGAAGACCGCTATCGCGGCTACCTCGGCTCGATGATGCTGGAACTGGCGCCAGGCGTCTATGCCCAGCCCCGCATGTCGGCCCGCGTGCGCCAGCGCCTGGCCGATGTGCTGGCAGACTGGCACGGCCGCCTGGGCCGGGGCAGCATCGTGATGTGCTGGGCCGAAACCGCAGCCAACGGTGGCCTTGGCCTGCGCACGTTCGGCACGCCGCCCAAGGACGTAGTGGCCCATGACGCGATGTTGCTGGTGCGCCGGCCATTACCGGAACAGCCCGAATCCCGGTGAATTTGCTCTTTCCTATTGTAAACAAGATGTTGTATAGTAGG # Right flank : CGCGCGTCGCGCAGTATCCGCCATGCGGCGCCCCCTGCGTCTTGCCCAACTCCCCCTTGCCCGCTGCCACGCAGCGGTGGCATGAGACGGGCATGCCTGCAGATCTTTTCCGCGCTCGATTTCACGCCGTTGGCCAACGCGGTTACCGGCTTGCGCGAGGGGCTGGTGCGCTTTGCCACCGATGAAAGCGATACGCAGATCCGCGACGGGCTGATCCAGCGCTTTGAATTCACCTATGACCTTTCGCACAAGATGCTGCGCCGGGTGATCGAGGCGGGGGCCGCCAATCCCGAAGAGGTGGGCCGCATGACCTTTCCCACTCTGATCCGCACAGCGGCCGAACAGGGGCTGACCGGGGCGGACTAGACCGATTGGCGGACGTGGCGCGAGATGCGCAACATCGCCTCGCCCATTGCGGCGTCGCCACCTCAGACAGAGCACACCCCGTATCCGTTCGCCCGCGCTAACTGCCAGAGTAGCAATGAATCGGGATACACTTG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCCCGCACACGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 478871-479204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHZV010000005.1 Novosphingobium sp. BK336 Ga0365276_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 478871 29 100.0 32 ............................. CTTCTTCATGTGCTCGATCTGCTCGACCGGCA 478932 29 100.0 32 ............................. AGCGCCGTGCAGGTCTTGCCGCCCCACTGCCC 478993 29 100.0 32 ............................. ACGGCCCCGACCTACACATTGCCCACGATTGC 479054 29 100.0 32 ............................. GTGCCGGTATAGGTGCCATCGGTGCCGCCGCT 479115 29 100.0 32 ............................. GTGAGCGCCTGATCCATGGCTGACCTTCAAAC 479176 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTTTCCCCCGCACGCGCGGGGATAGTCCC # Left flank : AAAGTGTTCGCCACAGCCTCAGTCGCGCAGCATGGCAACCAACGGCGCCACTTCGGGCCTTTGCCGCAAGTCGGTGCGCAGCAAGGGCGCTGTTTCGCGGGTGTGCCCAACCAGGCGCGCGCCGGGAAACTGCCGCAACCAGAAACCCCGGTTGGCCTTGCCCAGATCGTGCAGATAGGCCAGCACGCACAGCCGCGCGACATCGTGCGCGCCCAGTTCCCGCTCCGCCGCGCGGTTCAGCAAGCGTTGCCAATGCCCTTGCGCCACCAGTTGGGCAAACACTGCCGCCACATCGCCGCCGTGATCCGTCAGCGGCAGGGCTGACCGATGCGCCAGCTCATCAGCCAACTTGGCCCAGGCGCGTGGAATGGGGCTAGACATGCCCCCCACTTTGCCGCGAAACAACGCTACCCGCCACCCGCTTTTGCACAAGGGTCGACGGCACCGCTTGCACAATGCGTCGGCTCTTTCCCTTTGTGAACAGAATGTTGTATAGCAGG # Right flank : CAGCAATGGCGTTCCGTCGCCGACCAGATGCGTCCGAGGCTCCCAAGACTGGCGACTTTGATGGACGATGCCGAACCCGATGTCCTGGCATACATGACCACCCGTTTAGAGTTGGATATCCCTCTTACCGGCTGTCCAGCCGATCCAGCCAAGCTTGCGCCTGCTTGGGCTCGCCTACTGCATCCGACTTGACAGGCCCACGAGATGCGAGGAATTCCTGTTGAAGCGCGAAAGGCGGCATGCCGAGCTGCTCTCTCATTTGGTCGATCGCCTGACCGATTTCAGCCAAATTTTCGATGATCGGGGCTACAGCCTTGCGCGACCAGCGGTCTGCGTTGTGATCAAAAAGGCCCCATTTTCCTGCAGCCGTAACGCGCAAGGCATCAATCAGCGCTGCCATATATTCCGTTTCAAGTTCTGTACGACGAACGTCGAGGCGTTCCAACCTATCAGCCTTTGCCATCCTTTGATTGGTATATGGTCACGCCGCTGTCCGCAAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCACGCGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //