Array 1 426115-426348 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ955965.1 Bifidobacterium breve strain GED8481 Scaffold126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 426115 33 100.0 35 ................................. TAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 426183 33 100.0 34 ................................. CGTGACGAAATCGGCCAGAACATCGCGAAGGGGT 426250 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 426316 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= =================================== ================== 4 33 99.2 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TCCGGCGATTTGGAACTGGTCGAAGGCGAGTACGAGCTCATCAACCGTGTGGAGGAGGAGAATGCCGCCGAGGCCGCTGCTTCGGTGTCCGCCGCTCTGCCGACCGGTGGCTTCGTGATCCTCGACACCGCTCTGGATGACGACCTGCTGGCTGAAGGCTACGCCCGCGACGCCATCCGCGTCGTGCAGGACGCCCGCAAGGCCGCCGATCTGGACATCGCCGATCGCATCTCCCTGGTGCTGACCGTGCCGGCTGTTGATGTGGCCAAGGTCGAGCAATTCCGCAATCTGATCGCCCATGAGACGCTGGCTACCTCCTTCGAAGTGAAGGAAGGCACCGAGCTGGCCGTTGAGGTCGCCAAGGCATGAGATCGCTGAATTGAGTTTGCTGAGTTGTCAATATTGAACGTTGGGACAGCCCAGTAAACTCGATACGCCAATTGATATGAGCTTGTCGTTGTGGTTGGGATTGTGTGGATTCCAGCCACAACGACAAGTTT # Right flank : TAGGTACAGCCAGTTGAACACGGCTCCCATCCCGTTGTCGCTCCCCATCCGGGGAGCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCATCCGGGGAGCGTGGATTGAAATTACGCGTCAATGTACGGCAAAGGCGACGTGTATGTCGCTCCCCATCCGGGGAACGTGGATTGAAATTCGTCAAGCAGGGTCTTCAAAATCACACCCGGATGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTGGCTCGCCCACAACTGGTACTAAGGAGAGGGACAGTCGCTCCCCATTCGGGGAGCGTGGATTGAAATCTGTACGGCAAGGCTCAGACCGGCATTGAGGGCTGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGACGTCGC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 426573-427012 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ955965.1 Bifidobacterium breve strain GED8481 Scaffold126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 426573 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 426640 33 100.0 35 ................................. TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 426708 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCATTGAGGGCTG 426776 33 100.0 34 ................................. TGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 426843 33 100.0 35 ................................. TTGGCCGTCAACAACGGTTCCGCGTTGGCGCTGGC 426911 33 97.0 36 ..................G.............. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 426980 33 81.8 0 .............T...A.......G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 96.1 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TGTGGTTGGGATTGTGTGGATTCCAGCCACAACGACAAGTTTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTAACCGGGACGCAACCTCACCGCATGGCAGGCCGTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCGTGACGAAATCGGCCAGAACATCGCGAAGGGGTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCTTTCATCTGATTGGAACGACGCTTCCGATTCTGTCGCTCCCCATCCGGGGAGCATGGATTGAAATAGGTACAGCCAGTTGAACACGGCTCCCATCCCGTTGTCGCTCCCCATCCGGGGAGCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCATCCGGGGAGCGTGGATTGAAATTACGCGTCAATGTACGGCAAAGGCGACGTGTAT # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //