Array 1 47119-45597 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMIE01000087.1 Acinetobacter baumannii AB_TG2018 AB_TG2018_88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47118 28 100.0 32 ............................ TAACGTGGTGTGAGCCGAGAACCTGCAAGCCA 47058 28 100.0 32 ............................ TTTTGATGAGCAGGTATTTACACAATATAAAT 46998 28 100.0 32 ............................ TGATCAAGAATGATATGTACTAGCTCACTATC 46938 28 100.0 32 ............................ TTCGAGTCATAATTATAGTAAAAAGTCATCTT 46878 28 100.0 32 ............................ TACATAAAAATGCGGACCCAACGATAAGGATT 46818 28 100.0 32 ............................ ATTAATCGAGGAAAAAAAACATGAATGTTAAT 46758 28 100.0 32 ............................ ATCACTTAACCCATCATCAATAAGTTGGCCTT 46698 28 100.0 32 ............................ AGTCACCATTGTTCGAAGCTGTTGGGTCATTA 46638 28 100.0 32 ............................ TTGTTGCATCATTTGCGACTCATGACTATTTG 46578 28 100.0 32 ............................ AAATACAAAGTTAGGTATTGGTACTGGTGAAA 46518 28 100.0 32 ............................ AATATCCACCAATGATTTTGGTAAAGATAGAG 46458 28 100.0 32 ............................ AGACACATACGTAATGGTGTCAATATCGTATA 46398 28 100.0 32 ............................ TGCCCCAGCGAGCAAACGCCTTAAAAATCCTG 46338 28 100.0 32 ............................ GAGATTTTTGTGCGCTTATAGAACATGAGCTT 46278 28 100.0 32 ............................ GTAGGGATAGTGAGATTGTAGACCTTACAATG 46218 28 100.0 32 ............................ CCGCAGATTTACGGATGCCTGTAACTGTCATG 46158 28 96.4 32 ...A........................ TATCATGAACATTGTTCCTTGACCCACGGGCA 46098 28 92.9 32 ...A.....T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 46038 28 100.0 32 ............................ TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 45978 28 82.1 27 ....C......TCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 45923 28 92.9 32 ....C....T.................. AAACAACGAGCCTTGTCGCGGGTCGCCCATGT 45863 28 96.4 32 ...A........................ CAAATCAAAAGTGCAGTTGCTGCCTCAATAAC 45803 28 96.4 32 ...A........................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 45743 28 92.9 32 ...A.......T................ GTCAAACGACAGGGCTATAAACACTTAATCTT 45683 28 96.4 31 ...A........................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 45624 27 78.6 0 A..T........TC........C.-... | A [45620] ========== ====== ====== ====== ============================ ================================ ================== 26 28 97.1 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGCTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : TTTCTCTTTCGAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTGTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATCGGTAAGGCCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52209-54998 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMIE01000087.1 Acinetobacter baumannii AB_TG2018 AB_TG2018_88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52209 29 100.0 31 ............................. GTCTTTGCCAAGTATGTTAAAGACCCAGCAC 52269 29 96.6 31 ............................C TATTTATTTAAAAACATTAAACGATTTAATT 52329 29 100.0 31 ............................. ACTGTAGTGGGTCATAAGGAGATTTAGTTAG 52389 29 96.6 31 ............................C AACATATGGAATTGCAGCAACCGATGCATAA 52449 29 96.6 31 ............................T AGTTCATCAAATGAAACTAACGCTTCCCATT 52509 29 100.0 31 ............................. CTCAGGCAATTGTTGGGAAAAGTCGATTTCT 52569 29 96.6 31 ............................T GTTTCAAGGTCTCGGATAATTCCACATTCAT 52629 29 100.0 31 ............................. TATACATCGTTATTGCATTCTGCATATCCCA 52689 29 100.0 31 ............................. TTAAGAGAGGCTTGTTTAGATCAATACTTGC 52749 29 100.0 31 ............................. TAACAGGTCAAGTTACTGTTGACCCGGTAAA 52809 29 100.0 31 ............................. TAACCAAAATGAGAATAAAAAATTCTTTAAA 52869 29 96.6 31 ............................T TCACCTGTAGTAACAGTTGTTAGATAACCCA 52929 29 96.6 31 ............................T CTGGAGTCATGGGGGCTAATTTATTTAAACG 52989 29 96.6 31 ............................T TATCCCTCGATCTGCTGTAACGTGGTGTGAG 53049 29 96.6 31 ............................C CAAGGTGTGCGCACCAAAGCAAAACCAATCT 53109 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 53169 29 100.0 31 ............................. TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 53229 29 96.6 31 ............................T TGTAAAACCTCTGGATTAAGCATTGCGTTCA 53289 29 96.6 31 ............................T CTTCCTGAGTTTTAATCCCATTTGCCTTACA 53349 29 96.6 31 ......T...................... AAATGACCATCAATCGACAGTGGTTTACCTT 53409 29 96.6 31 ............................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 53469 29 100.0 31 ............................. GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 53529 29 100.0 31 ............................. ACACGTTCTCTATATCGCTGTTTGCGGTCAT 53589 29 96.6 31 ............................T TCAGTTGGATATGCCTTTGATACCAAGAAAC 53649 29 96.6 31 ............................T CTCCCCCCTCCTCGATCGGCTGTGAAAGTAC 53709 29 96.6 31 ............................T TTAAATCGTCATATTAAGGCGCAGTTCCGAA 53769 29 100.0 32 ............................. AAGATCTGACCAGCTAAAACATTCTGGTTATC 53830 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 53890 29 100.0 31 ............................. CATGGGAGCTTTCATTCATATATGTCATTAG 53950 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 54010 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 54070 29 89.7 31 ...AC.......................G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 54130 29 89.7 31 ....C.......G...............T TAAATGCTCAACTACTTCTGTAGCTAATGGA 54190 29 86.2 31 ...GC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 54250 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 54310 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 54370 29 86.2 31 A..GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 54430 29 82.8 30 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTT 54489 29 75.9 31 CG..C.......CC......C.......T TTATAACCACCAGTTAAAGTATTGACTAAAA G [54491] 54550 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 54610 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 54670 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 54730 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 54790 29 82.8 31 ....A......TCC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 54850 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 54910 29 89.7 30 ...GC.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 54969 29 82.8 0 .G..C...................AT..T | G [54973] ========== ====== ====== ====== ============================= ================================ ================== 47 29 93.9 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACCCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTCGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-57] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //