Array 1 3444-1702 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPJE01000024.1 Chlorobium sp. KB01 828, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3443 32 96.9 33 T............................... CGATGGGGATGTACCTGAAGCGCGGGGGAGCGG 3378 32 96.9 33 T............................... TGGGGTTTAATTGTCTGTGAATCTGCAACTACA 3313 32 96.9 33 A............................... TTTCAATATTGTCAGATAGTCCTCTAATAAAGT 3248 32 96.9 34 T............................... GCCGGTCAAGCGGGCAAGCTTAATCGCCATTGCT 3182 32 100.0 33 ................................ AAACGTTACGACAGTAGCAGCAAAAGCAGCGCT 3117 32 100.0 33 ................................ TCGAGTACACCGGTGAGACCGCAACCTATGGCG 3052 32 100.0 35 ................................ GACCCGAGAAACGCATCGCTTGGGCTCCCGACAGT 2985 32 100.0 34 ................................ AGACCGTGAAAAGCATGCGGTAAGAAAAGGAGTG 2919 32 100.0 34 ................................ AGTTTCCTTGTCGGTTACCATCACTCTCCGGTTG 2853 32 100.0 33 ................................ TTGAGCAGCTTGATTACGACAACCGGTTTCAGC 2788 32 100.0 34 ................................ CGTGATTTTGATACAGGGGTGTACATGATCCTTT 2722 32 100.0 34 ................................ GCGCAAAAGGCAAAAAGACGGTCGCATTTTGCGC 2656 32 100.0 34 ................................ ATATGCGCTGAGTTCTTGCTTGCCGTCCACCCAT 2590 32 100.0 34 ................................ AGGTGTACAACAATTTGTACACCTGAAGCGAAAC 2524 32 100.0 33 ................................ GTGTAGTTGTAGTAAACTCTTTTCTCACGGTAT 2459 32 100.0 33 ................................ TTTGAAAAAGTGAAAAATTAATTTGCTTTTATT 2394 32 100.0 35 ................................ CCCTGTTTATCAAAGTGGAAACCGGACTTGGCAAT 2327 32 100.0 34 ................................ GGCAAAAACCCGTGCAGTGTATTTGATCATGCTA 2261 32 100.0 34 ................................ AACTCACGAAGAAGATCAAGAGCGTTTTCCTCTT 2195 32 100.0 34 ................................ TCTTTGACAGTTGTACGTGGAAATGCCGAATTGG 2129 32 100.0 36 ................................ AAACCAAGAATGTCGATCTTCAAGAGTCCAAGCTCT 2061 32 100.0 34 ................................ AATTTTGCGAGCAATTGCATTCTCCAACTCCTCA 1995 32 100.0 34 ................................ GGATTACCTCACCAATTGCCTCTTTTGACCCTCC 1929 32 100.0 33 ................................ AAAAGCATGAAGAATTCGGCTTCAGCTATCACC 1864 32 100.0 34 ................................ AGGATATCGGAGAGATCGAGGGAGAGCATGGCGG 1798 32 100.0 33 ................................ TCCAGACAATCTGGAGTGTGTTTCGCGGGTGCT 1733 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 99.5 34 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : AAGCCTATCCGCCATTTGTCTGGAGGTAAACTATGCTTGTGCTTGTAACCTATGATGTCAATACTGAAACTCCGGCAGGACGACGAAGATTGCGGCGCATTGCAAAGACCTGTCAGAACTATGGCCAACGGGTTCAGTTTTCTGTTTTTGAATGTAATGTCGATCCGGCACAATGGACAAAATTACGGGGAAAGCTGGTTCATGAGATGGATCATAAATTCGATAGCCTTCGCTTTTACTTTCTTGGGTCAAACTGGCAGAATCATATTGAACACGAAGGAGCAAAAGAGCCCCGTGATCTCGAAGGTCCGTTGATTTTGTAATGCGCGAACGTAAAGCTGTACCTAAAAAACGCCCTCGTTCGCGATTGATGTAACTATCAAATAATTATAAACTTATAGATTCTCTTGTCAGGTTTTCGTAAAATGTTGTTTGACATAAAGAGTGGTTCGCGTTTATTCGACGTTGAGACCACGAAATACCTGATTACAAAGATAGAC # Right flank : AGTTCGTCGGCAAGGGACTGTTCGAGTACGACATAGGAGTCGCGGATGAGCGAGACGGCATCGTACTGCGGCAGCCCCATGCGTGCATCCTGAAAATCTATGATAACGGGCATTCCGTTACGGACCATGATGTTGCGGCTGTGAAAGTCGCGATGATTGAGTACGAAATGCTCCGGCTGGACGAGGATTTCAGTTATGGATTCGAACTCGCAGCGAAGCTCTCCGGCTTTGCTGCTGTCGAAATCCGCCCCGAAATAACCGAACAGGGCGTGTTCGATGAAAAAATCGAATTCAAACATCAGTTTTTCCCTGTCGAAGCTGAGCCTGAATGGCAGCCGACGGGGATCGCCGGTTATGGACTGAATTCCGGCAAGCGTATCGATCACCTCCCGGTATATCTCCGCGGAGAGGCGCTCTCTGTCCATGGCGACGAGGTCCTGCAGCTGCACCGTTCCGCAGTCCTCGATCAGCAGAAGGCCCTCTCCGGCATTGACGGCAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2340-3015 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPJE01000061.1 Chlorobium sp. KB01 1700, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 2340 35 100.0 36 ................................... TGTAATGCTGGAGCTGAGTATGTGCTCAGCGTCTGG 2411 35 100.0 35 ................................... ATCAAGACACACACATCAACACGACTACGCACCCA 2481 35 100.0 37 ................................... TGCGGGGAGCAGGCGGTTGCCGCTCTGGATTGTGGAC 2553 35 100.0 38 ................................... GCCCTGAAGGGCACACAGGAATACGCGGAGTTCATGAG 2626 35 100.0 37 ................................... CCGGAGATATAGGTAGTTCACGCTTCACTGTCCATGT 2698 35 100.0 37 ................................... AAACAATACCCGAGATGTTTGAGAAGGTCAGATCGGC 2770 35 100.0 35 ................................... GTGTTGTTTTACCTGAACCAGCCGGGCCGTACACC 2840 35 100.0 36 ................................... AACCGTACGGTTATTTATCAGCCTCTCAAACTCACC 2911 35 100.0 35 ................................... TCTTTTTGTTGTGAACATGTAACCGGGTTCAGTCG 2981 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 10 35 100.0 36 GCATATATCTAATTGCACTCACCGAGGATTGAAAC # Left flank : CCGTTAACGATGGTATCACCATCAACGAAGATGTAGAGCTTTACAACGTACGCCCGGCAAAAAATATCTGAACATTTTTGAAACAAGAATGTGGCAGGAGTCCCGTGACGGCTATACCGGCAAAACGCTCAATTTCCGGCGCCATATTGAAAAACAGGTCAGGATCATGCGGGATGTCATAGCCGGAACCAGGGATAAGTATGATCCGTACCGGCTTCCGGTATAGAGTTGCCCAAAATAAACGCAGATGCATCGAGACCTCACGAACAGGAAGCTGAAAAACAGCTCTTTTCGACTGTAACATAAGGCTTGGTATGGGTTTAAAAGATATTTTCATGCACAATGAGCCTTCGATGTTGTTTATCTTCATGATTTTGTTTAAGATACAGATGCTGTACAAGAGTAAAATCAGGCCATTGTCCCTTGAAATCGCCGGTTTTTCAACGAGCCTTCGATTTCGCGCCAGCAACCCTTGCCAGTAAAGGGTTTCCGGATGCACT # Right flank : CCCAGCGTAGTCCGGCCACGGGGCAACGCGCTTAAGCATATATCTAATCGAGTGAGACTTTGGGACGTTGTTTAATAAGAGAAGAAGTTGGTGTATCTTTTTTATATTACTTACGAATCATATTCTGTCAGCAAAACAAGCGAGGATGATACATGCCGAGAGGAGCGAGACTTGATGCGCCCGGAACATTGCATCATGTAATTATCCGTGGGATAGAGCGAGGTGCTATAGTTACCGATGATGATGACCGTAAAGAGTTTATGCGTCGCATGGGTACTCTTGCGAAGGGTTCCGGAACAGCAATCTATGCCTATGCGCTGATGACGAACCATCTGCACATCCTGCTCAAAAGCAGCGAGAGCGGACTCTCAACCTACATGCGCCGCCTGCTTTCCGGTTATGCTCAGTATTACAACCGTCGCCATAAAAGAGCAGGCCATCTTTTTCAGAACCGTTATAAATCAATTATCTGTGAAGAGGAGGCATATTTTGACAAACTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATATATCTAATTGCACTCACCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //