Array 1 46797-47811 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDSF010000071.1 Phocaeicola vulgatus strain VPI-4025 scaffold39.1-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 46797 33 97.0 33 ................................G GGCTAAAATTGAAAACACGGTCAATCGGAATAT 46863 33 97.0 33 ................................T ATTTCGACGGCATCCAATCCGGGGACAATCTGT 46929 33 97.0 32 ................................C CGACCAAATATTGAATGCAAACATTACAACCA 46994 33 97.0 33 ................................T GTTATCAAGGCAAACGGTAACCAAGAAATTACG 47060 33 100.0 33 ................................. AGTCAAACTAACTAATATTTACAACCAAAGATT 47126 33 100.0 32 ................................. TGTATTAGTTGCAAAAATGTTTATACCAAATC 47191 33 100.0 32 ................................. AATTGGCGTGGCAGTTCGTAAAACGCAATGGT 47256 33 97.0 32 ................................G GTTGTACGTTCCGAACATTTGGACGCATTTCT 47321 33 97.0 31 ................................C TTCTTGGGAAGCAGCGCGAGCAGCACGTCCT 47385 33 97.0 33 ................................G GAAAACAACTAAATCAACATCTAATTCTCCATT 47451 33 97.0 32 ................................T TTACTCTCTGTAATCTTTATTATTGACCTAGA 47516 33 97.0 33 ................................G ATTATGCACCCTCGTCAAACGGGGCAAGGGATT 47582 33 100.0 31 ................................. TATTCTGAACACATTGCAAATGTACAAAAAG 47646 33 97.0 32 ................................T GGGAAGCTTGCGCCGGATACATTATGGACGTT 47711 33 100.0 33 ................................. ATGACGAGGTGAATACGTGTATAGACAACCATA 47777 33 93.9 0 ....................A.........G.. | TA [47796] ========== ====== ====== ====== ================================= ================================= ================== 16 33 97.7 32 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //