Array 1 260723-261616 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP054134.1 Streptococcus oralis subsp. oralis strain SN51445 chromosome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    260723	    36	 100.0	    30	....................................	AAAATCAAAGGTAGGCACTACCATAGGTTA	
    260789	    36	 100.0	    30	....................................	TCATGAATATAAACCGCGTCAAATGCGTCG	
    260855	    36	 100.0	    30	....................................	GAATAATAGATAAACATCAAATCATCCGTA	
    260921	    36	 100.0	    30	....................................	AGATGCCAAAGAAATTCAAGAATGCCATGA	
    260987	    36	 100.0	    30	....................................	TTTTATCTTTTTTATAGAAAGGAAAGTAAA	
    261053	    36	 100.0	    30	....................................	TGTTACAGCCAAAATCATTTCGGATAGACT	
    261119	    36	 100.0	    30	....................................	TGGAACGGTTGGCAATGTAACAGGCGACAC	
    261185	    36	 100.0	    30	....................................	ATGGAACTCTGACAATGTATATTTGAGTTT	
    261251	    36	 100.0	    30	....................................	TGATTTATTCGTAGATGTATCAAGTCATAA	
    261317	    36	 100.0	    30	....................................	TGATTTATTCGTAGATGTATCAAGTCATAA	
    261383	    36	 100.0	    30	....................................	AAAATATCAAGAACATTACGATGTTATATC	
    261449	    36	 100.0	    30	....................................	ACGAAATCTCTTTGACCTCTGTGGAATCAA	
    261515	    36	 100.0	    30	....................................	TAGAATACTTGAGCTTATTTTGTGAAAAAT	
    261581	    36	  97.2	     0	...................................A	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.8	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCTCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG
# Right flank :  AAAGCTACTCATTCTTTGAGTAGCTTTTTAGCTATTCCCCTACACATAGCTCATTCCCTTATAGCAAAGGAAAACGGCTAGTGCGATAAAAAGTACAGTTGCTCCGATTCGCTGGCTGGTGCTATACATTCTTTTTTCCCATTTGACTGGAAAAATGACTGCTAGAAAGGCACCTCCTACTGAACCACCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAATACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAGCCCGTATAGGGAAGTGGATGCCCCAGCAGCGACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCAGATAATAGATAGAGAAAGAAGAACTGCTTAGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAATGA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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