Array 1 3747031-3745127 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061115.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S585 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3747030 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3746969 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3746908 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3746847 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3746786 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3746725 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3746664 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3746602 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3746541 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3746480 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3746419 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3746358 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3746297 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3746236 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3746175 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3746114 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3746053 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3745992 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3745931 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3745870 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3745808 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3745705 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3745644 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3745583 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3745522 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3745461 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3745400 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3745339 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3745278 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3745217 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3745156 29 96.6 0 A............................ | A [3745129] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3764655-3763162 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061115.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S585 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3764654 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3764593 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3764532 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3764471 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3764410 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3764349 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3764288 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3764227 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3764166 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3764105 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3764044 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3763983 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3763922 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3763861 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3763800 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3763739 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3763677 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3763616 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3763555 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3763494 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3763433 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3763372 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3763311 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3763250 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3763189 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //