Array 1 42286-41464 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NDHU01000018.1 Corynebacterium diphtheriae strain c111 c111_contig000018, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     42285	    29	 100.0	    32	.............................	AGTTCCAAGACCTGCTTTCACACCCCAAGTGC	
     42224	    29	  96.6	    32	............................C	TTGCCGCCGCAATCACAACCCTGAAATCCGAG	
     42163	    29	 100.0	    32	.............................	ATAACCGAAAAGTTCCCGAATACTACCGATTC	
     42102	    29	 100.0	    32	.............................	CAAGGGTTGTATCAAAGTCTCGTTGTTGTTCC	
     42041	    29	  96.6	    32	............................C	TCGTGAGACTCCGTAGCAGGGGAAATGACCAT	
     41980	    29	 100.0	    32	.............................	ATTTGCCCCCTACTGACGTAACCGCTGGTAGG	
     41919	    29	 100.0	    32	.............................	GGGCAGAATCCTACAGACCATACGATGGTGTT	
     41858	    29	 100.0	    32	.............................	TAATACGCCCCCACCGCAACCTGCACCACAGC	
     41797	    29	  96.6	    32	............................T	GGATAGAAAATAAGCAATGGTTGCAGCTGCTA	
     41736	    29	  96.6	    32	............................C	CACGAGTGGACTGCCTCCCACTTTTCTTTCAG	
     41675	    29	  96.6	    32	............................C	ACACAGAATGGCTCCACATGATCGCGGGAGAC	
     41614	    29	 100.0	    32	.............................	CTGCCAGGGCGACAAGGGGCATATCTGTTTCA	
     41553	    29	 100.0	    32	.............................	TGCGCTGCTTCGACGCCTCGAGCCATTCGGAG	
     41492	    29	  89.7	     0	...........GT...............C	|                               	
==========	======	======	======	=============================	================================	==================
        14	    29	  98.0	    32	GTTTTCCCCGCACCAGCGGGGATGAGCCG	                                	       

# Left flank :   CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAAGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATACAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT
# Right flank :  AGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAAGATCAGG

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTCCCCGCACCAGCGGGGATGAGCCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-12.70,-12.70] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.18   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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