Array 1 26076-26366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTW010000011.1 Listeria seeligeri strain FSL L7-1123 NODE_11_length_116780_cov_52.582444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 26076 29 100.0 36 ............................. ACAATTGTTGCTACAGAAAGCGTCCAAATAGCAATT 26141 29 100.0 34 ............................. ATAGGTTAGGCACTATCTTAAGTACTAAGATTGA 26204 29 100.0 40 ............................. TCATTATCTAAAGTACACAAATAAATATTACCATCACTAG 26273 29 100.0 36 ............................. TTTTAACGGTGGTAGTTGTTAAGATATTACCATCTT 26338 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 5 29 100.0 37 GTTTTAATTACTCATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTACTTCAAGAGACCAGAAGTGTTTTAACTACTTTTAATCATCCCAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCGAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTCATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 32589-34748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTW010000011.1 Listeria seeligeri strain FSL L7-1123 NODE_11_length_116780_cov_52.582444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 32589 29 100.0 35 ............................. ACACGAATTGTTTATGAAGCAAAAGGGCGCAAAAC 32653 29 100.0 34 ............................. GAACGCTCTGTGTCGTTTCATGTATGATATCTGA 32716 29 100.0 36 ............................. TTATCATGATTTCCGCAGGTCTTGACGGCGGATATA 32781 29 100.0 35 ............................. TAAACAATGCTTGTAAATCATATTATAACATTAGT 32845 29 100.0 35 ............................. AAAGTCAAATGGATCAAGTAGTTCTAAAAGTTATA 32909 29 100.0 36 ............................. CGCGTTGGATTGGGTCGCCCTGCGATTTTTGTTCAA 32974 29 100.0 35 ............................. GATTGTTGAATCGCTTTGATTAAATCTGCATTACT 33038 29 100.0 35 ............................. AAATATACGATCCATTCGCCGGCGGTTCTGTTCGG 33102 29 100.0 35 ............................. TGGCTAATCTTGATATTAGAAGCGTTGTCATCCTC 33166 29 100.0 35 ............................. ACACCATGATTATAATTTAATGCCATTGCATATTC 33230 29 100.0 36 ............................. CTTCGATGGTAGACTTGGCTGGTAACTTGGCTTCTT 33295 29 100.0 36 ............................. ACTTCTGCTAGAACATTACGTTTTAAGAATGTCTTT 33360 29 100.0 34 ............................. TATGGATGGGAGTCGGCTCAAGATGAGGCTAAAT 33423 29 100.0 34 ............................. ATAAAAACGGCATCCCATAAAATTCTCGTACGGT 33486 29 100.0 35 ............................. TCAATTAGCGCAAATATAAGCTTCACACCTGCGTC 33550 29 100.0 36 ............................. CGCCACTTCGCTATAAGCTCGATTTAGCGGGCGCAG 33615 29 100.0 37 ............................. AGGTAATCCCTGTTGTTAATCTGTATCAGGATTACCT 33681 29 100.0 36 ............................. ATCTTCTACCTTATGTTTTTTACCGCTAGAGTCTAA 33746 29 100.0 36 ............................. GCTTCAATAAAGCGATTTCTTTATCATGATCGTTTT 33811 29 100.0 37 ............................. GTATTCTAGCGCTTTGGGTGTGGTTACTTTAGTGATA 33877 29 100.0 36 ............................. GTATTAACAGAAGTATTTGATCGTTACGAAAAAACA 33942 29 100.0 37 ............................. AGCGCTGCATTTCGCTGGGGGCTCGAAAAGGGGGAAG 34008 29 100.0 37 ............................. AGAAGAAGCGCTAGCGCTACATACGCCCATTTATTAA 34074 29 100.0 34 ............................. CGCCTAAGCCCGCAATACAAAGCTAATTTAATCA 34137 29 100.0 36 ............................. GAGTTCTCGTCAAAGTAAAATTCACCTTCGCGTGTT 34202 29 100.0 35 ............................. AGATCAGAGACTATAACAGGCAGTAATGGTTCAAC 34266 29 100.0 37 ............................. ATATGTATCTTGCGAAAAAACATGTAGATTCATTACT 34332 29 100.0 35 ............................. GTTAGACGAATAGCAACTGGATATGCTTGTTCAAA 34396 29 100.0 36 ............................. TTCCTTATTTGCTTTCAGCTGCGCGTCAGAGGTCGT 34461 29 100.0 36 ............................. AGAAAAACGTCCCCTTCTTGATCCCAGTGCTTCAGC 34526 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 34590 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 34655 29 89.7 35 ..........T.............C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 34719 29 86.2 0 ........C....C..A...........G | T [34745] ========== ====== ====== ====== ============================= ===================================== ================== 34 29 99.2 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTTTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTCGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 44558-46600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTW010000011.1 Listeria seeligeri strain FSL L7-1123 NODE_11_length_116780_cov_52.582444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 44558 29 100.0 37 ............................. ATTTTAGGTACAAAACCTTCGTTTCTAGAAAACCCGG 44624 29 100.0 35 ............................. TTTTCTTCTCTTAGAGAAGTTAATCTTTCGCTTAA 44688 29 100.0 35 ............................. CCAGCTATTGCTCCAATCCCGCCAGTGAGAACACC 44752 29 100.0 35 ............................. AATAATCACGGGAGGGGTCACTTTGACCTCACTTG 44816 29 100.0 35 ............................. AAAGGTGAAGTTAAGTTCTTGTTATTCGCAATGTT 44880 29 100.0 36 ............................. GATTGTTTGTATTTTACACAAGCTGGTTATGTTGAT 44945 29 100.0 35 ............................. TTTACCTGACTGCCTACCGAAGTTCACTGCGCTGC 45009 29 100.0 35 ............................. TTATATCCGGGGATAAAATTCCTCAAAGTGCTAGC 45073 29 100.0 37 ............................. AAAAGTAACAGGTGCCAGTGGTGGCGTATTAAGAACC 45139 29 100.0 35 ............................. TATATGAACGGAGGTTTTGCTTTACACCCGTCAGC 45203 29 100.0 36 ............................. GCGACAAACAACACGTATAAAAACAAAAAATTAGCG 45268 29 100.0 37 ............................. TTTGGACATGATGCGAAATATGTACTAGAGAGCTATA 45334 29 100.0 37 ............................. CGGAGAAGTTAATTGTTTTGCCAGCCATAGGAGCGCC 45400 29 100.0 36 ............................. GTTGTTGGGCTTTTTATATTGAAAAGTAATATTTTT 45465 29 100.0 36 ............................. TCCTTATCTATTTATATTTTGTGTTCCTTTACTATA 45530 29 100.0 36 ............................. AAAAGAGGAATAGACTCTAAAGTTTACATTTTTAGG 45595 29 100.0 36 ............................. CAATCTACATTGGATAAAGTAAGAGGGCTGAAAGAT 45660 29 100.0 36 ............................. GGTAATGGATTCTATTGAAACATCGTATTTAGAACC 45725 29 100.0 36 ............................. TCGTGATTCCCCTAACGTGTTATCTTAATCGAAAAC 45790 29 100.0 35 ............................. GACGAAACCGACAGCCTGCTAGAGAACATAGCAGA 45854 29 100.0 36 ............................. GAAATAGTCTTCGTGTTCTTCCGCAACGTCCTTGAC 45919 29 100.0 37 ............................. ATCGTCACGGTTTGAAGTGCTTTAGTCAACGAAGAAT 45985 29 100.0 34 ............................. TTGTGCGAAAAACACAAACAAGATTTAATTTTAC 46048 29 100.0 37 ............................. TTTGTAGGGATTGCTATCCTTCCATTATTCCCGTTAT 46114 29 100.0 37 ............................. AATTGAGGGCCTAGTGGGGTAAAACCCGTGGAGGTTC 46180 29 100.0 37 ............................. CATTACAAATTTCGCACATTATTCCGCCACCTCTTCA 46246 29 96.6 38 .......C..................... ACTGAATTGGACTTCGAACTCTTGGCCTGTCAAATAAC 46313 29 96.6 35 .......C..................... TATTTATTCAACCTCCATAAGTCCGCGCGCGGTAT 46377 29 96.6 35 .......C..................... ACAGCTTTGTGTTTTCTTTCTTGGTGTCCAGTAGT 46441 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 46506 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 46572 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 32 29 98.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGGTATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGTGA # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTCATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //