Array 1 1765-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNF01000019.1 Prevotella bivia DNF00188 contig019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1764 47 100.0 29 ............................................... CTACCGAAGTAAGTGCCTTTAATTAGCAG 1688 47 100.0 30 ............................................... GCAAGGCAAATTTGACTCACTTGGCGAGAT 1611 47 100.0 29 ............................................... TAAAACCGATGATAGCATTTTTCAGATCA 1535 47 100.0 29 ............................................... AGATGACCAGATAAAGCTACTTCTTCGCT 1459 47 100.0 30 ............................................... AAAAGCAGATACAACAGCTTACAAATATGC 1382 47 100.0 30 ............................................... TGGTCCTACAACCTCATCGAGCAAAGTCAT 1305 47 100.0 30 ............................................... ACACTCATAGTCATTTTGCGCCCTTATACG 1228 47 100.0 30 ............................................... CCGATTAAACCTAATTCCATAGCCCTATCG 1151 47 100.0 29 ............................................... CCTATAATACACCACAGTGAAGTATATCA 1075 47 100.0 30 ............................................... GAGCCCTGATGAAAGGAGGAAACGCAATCG 998 47 100.0 30 ............................................... TGAGTCTTTGCAAGCAGCATCACAAAATAC 921 47 100.0 30 ............................................... AAGCTGAAATGGCAAAACTGACAATGGAAA 844 47 100.0 30 ............................................... CTATGAACAGAAGCGAAGAAATTTGGACGA 767 47 100.0 30 ............................................... ACAGCGTGCAACTTCTTCAAACCTTATCGA 690 47 100.0 29 ............................................... TTGCTCCGAGAATAGGATAATAGAGAATG 614 47 100.0 30 ............................................... CCAGCTTATGAGAGTTTAGTTTCTCATCAA 537 47 100.0 30 ............................................... AAGACTTGCCGTGCAATGCACAGCGATATA 460 47 100.0 30 ............................................... CAACTTATACGAATGGATTTCTTTCGGGTA 383 47 100.0 29 ............................................... TCGCCGCTTGGTGGGAAAACAAAGAGGCA 307 47 100.0 30 ............................................... GGCTGGTGCAGAGTGGGCATTGGCTAACCA 230 47 100.0 29 ............................................... TAGGATTGGTAGAAGCATAATTATTATTA 154 47 100.0 29 ............................................... CCCTTACTAATCATCTACTAAAATCACTA 78 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 100.0 30 GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Left flank : TTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAACAGCTCTCATCGTCCACCGTTGAAACCTTC # Right flank : CCTTCTTTCAAGTACATAAAATGCACCTGAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1387-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRNF01000020.1 Prevotella bivia DNF00188 contig020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1386 47 100.0 30 ............................................... TGTTCCATAATTGTATAGTTTTAATTGTTT 1309 47 100.0 30 ............................................... TAGTACTTAGATTCGAAGATGGCAAATATA 1232 47 100.0 29 ............................................... TGATGATCCAGTAAAAGAATGACCGTCTA 1156 47 100.0 29 ............................................... AGTTAAGGAATAATAGGGAACTAAGGAGT 1080 47 100.0 30 ............................................... TACAGGATTGGTTTAAAGAGATGGGAATTT 1003 47 100.0 30 ............................................... CATAGACTTAACAGTCAACTTAATATTGAA 926 47 100.0 29 ............................................... AAGCTGCTTAATTGTTATGTTTCCCTTTG 850 47 100.0 30 ............................................... TCGCCCGTGAACCCACTTACTAGCAACATC 773 47 100.0 29 ............................................... CCATAGAGTCTTGTTCTTTGCTCATTGGG 697 47 100.0 30 ............................................... AGAGCCATTCGAGAAGCAGGATTCAAGATT 620 47 100.0 30 ............................................... TCACTTTATTGTCGTTACAACAAATGATTA 543 47 100.0 30 ............................................... CTATTCAAATGAGCATCTTCCGCATATTAT 466 47 100.0 29 ............................................... TAGGGATGCTAATAATCGTGCTTATAATC 390 47 100.0 30 ............................................... TAAATCAATACCAAAACTTTCACAAGTCCA 313 47 100.0 30 ............................................... GAAACAAAGATATAAATAAACTTTGAATTG 236 47 100.0 30 ............................................... ACTGTACACGATATGACCAATGTGAGCCTT 159 47 100.0 29 ............................................... CCTATTTCTTTAGACAAGAATAAAGAATT 83 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 18 47 100.0 30 GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Left flank : AAATGCTTCTCAGGAGAACTCCGACAAATAGCTTATCCCGAACTATGATATGACTACTTTAGATCGCTTTAGCGAATATCGAATTATGTGGATACTGGTATTTTTCGACCTTCCCACTGAAACGAAGAAAGATAAGAAAGCCTACATAGACTTTCGAAAAACTCTTCAAAAAGATGGATTTACTATGTTTCAGTTTTCCATCTATGTTCGCCATTGTGCTAGTCAAGAGAATGCTGATGTACATATTAAGCGTGTCAAAAGCATACTACCACCTTATGGAAAGATTGGAATAATGTGTATTACCGATAAACAATTTTCCAATATTCAACTCTTTTATGGTAAAAAACCACAAAAGACTTCCACACCTTACCAACAACTTGAACTTTTCTAGAATCAGAAAATCCTCCTTATCTCTATTGATGAGGAGGATTTTTGCCTATCTTTTTATTTTTCTAAGTATCTCTGTAAATAGCTATTATCAAGCATATTACACTGATTAG # Right flank : CAAACGATGATAGAGAGGCACAGCGTATGGCGTTGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //