Array 1 6689-7815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJXA010000211.1 Streptomyces alkaliterrae strain OF8 NODE_211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6689 29 100.0 32 ............................. CGGAGTGTCCTGAAGGAGCGGCATCCGGTGCG 6750 29 100.0 32 ............................. GCCGTCAACCGCTGGGACTCCAACTGGCGGCG 6811 29 100.0 32 ............................. CCACCTCATTGATCAAGATGAGATTGCCGGTG 6872 29 100.0 32 ............................. CCCTCCTCAGCTCAGCGCCGCGACGACCGCAG 6933 29 100.0 32 ............................. CAGGGCCGGGGCGGCGGCACCCACGGCGCCCT 6994 29 100.0 32 ............................. GTGGAGCTGCCGGCCGACCCCCTCCAGCACCA 7055 29 100.0 32 ............................. GGCGTCGTCCACGTCCGCCGGCACGATGAAGA 7116 29 100.0 32 ............................. GGGGGATCAAGGGCCGGCCTCGGGGAGCGCTC 7177 29 100.0 32 ............................. GGGGGATTGAGGGCCGGCCTCGGGGAGCGCTC 7238 29 100.0 33 ............................. GCGCGCTTCACGTTGTCGAGGGCGCGCTGGTAG 7300 29 96.6 32 ..........T.................. GACTAGCCCGACGCCGGTAAGCGCAACGATGT 7361 29 96.6 32 .............G............... CGACAGGGGCTCTACTCCTTGACGGGAGTCCA 7422 29 100.0 32 ............................. GTGCGGAACTACTGCAACCACGTCCGGGCGCT 7483 29 100.0 32 ............................. AACTGCCGGTCGCCGCGGTCGTCCGGGTAGTA 7544 29 100.0 32 ............................. TCGCCACCGGCGACGACGGCACGGGTACCGCC 7605 29 96.6 32 .........................C... TGGTCGTACTGTTCGTGCCAGACCACGGCTGC 7666 29 96.6 32 .........G................... GTGATGAGTTGGCGGGGCTTAAGGCAGGTGAA 7727 29 89.7 32 .........G..T............C... TTCGACGACCCGGAAGTCGATGAAGCCGGGTG 7788 28 75.9 0 .........G..TG.....CC.-...G.. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.5 32 CTGCTCCCCACGCACGCGGGGATGGTCCC # Left flank : CCGGCCTGACCACAGTGGTCACAGCACATGGACACCGAGCACATCTTCAGCCACCCAAGAGCCACGCCAAACATGGCAAACGCCAAGAACGTAATCATTTCGCCCCTTCGGTACTTCCGCTGCCTCACCGGGCGCCCCCAGCCGCCGACGCGCAGCAGGATGTCCTACTCCTGACGAATCGTCAAATGCCTGATCGACACGATCACTCGTGCCCGGGTAGTTACTCACCCTGTGGCGATGCGCGCGGAGTTTGCCGACGTGCGCACTGGTGCGCCGTCGCTGGCCGCGCTCCGCCCGCAGGGCAACCTCGTATCCCCAGGTCGTCGCGTCGCGACGCGCCACGGCGGACTGGCCACGATGCTCGTGACCGGTTGCGCACGCAGCAGCGACCGCCTGCCGCTCCACAGACCGCTCCCGGGGGAGCTGGAAGTGAAATGTCCGAATCTCCAATAGTTGCTCAATGCGGCCACCCGCCGCCCTAAACCCCCAGCTCACCAAGC # Right flank : GCGGGGGCGGCATTGCGGGCGGAACTGAAGTGCCGGCGCAAGCTGATGGCCATCCTCGACCAGTCTGGTCTGTGAGGAGCGAGTGGGCTCGGCGCCCCTTCACTCGTGTGGGCCGCGTCGCTCAGTCCTGGTGACCGGTGCGTGCCTGCGGTCGATCGTACTGACGTCCTCTCAAAGGTGATCACTTCCAGATTCGTCGAGGGCGGGGGCGGCGCGGGCGATGTCGCCGATCCGGCTGGGGTTGAGCCGGCTGGGGCTGAGGGTGACGTGCTGCAGGGTGCGCCAGCAGTGCCCGAGCCGCCAGGGTCTGCGGGCGCCGGGCGCCGGGCGCCGGGAGCTGGGCGCCGGGCGGCGGGTGGCGGGCGCTGAGCTTGGTGGGTTCCTTTGTATGCGGAGCCGGTGCGGGCGGGTGTGCTCGGGCGGTGCGGTATCCGTGCGCGGTCCTGTGGCGGAGGGGTGCCGGGGCGGTGCGGGGGGCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12578-10838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJXA010000126.1 Streptomyces alkaliterrae strain OF8 NODE_126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12577 29 100.0 32 ............................. CCGTTGGCGGCGGCCCGGCGGTCGGCGCGGAC 12516 29 100.0 32 ............................. GGCGAGGTCTTCGACGTCGAAGCCGCGCTGAT 12455 29 96.6 33 ............................T CAGCACATCTAACCCCTAGGCGGCAAATGGCGG 12393 29 100.0 32 ............................. TTGGTGAGGACTGGCGAGTCGTCACGGACCAT 12332 29 100.0 32 ............................. GCGCCGGTATCGAGCCCGGCCGGGGACGTCGG 12271 29 100.0 32 ............................. ATCGCCCGGGTGGCGATCGGGGCGCTCGGCGG 12210 29 100.0 32 ............................. ATCGCCCGGGTGGCGATCGGGGCGCTCGGCGG 12149 29 100.0 32 ............................. GGGGGCGACGTGACAGCCGTAGAGGGCAGCGT 12088 29 100.0 32 ............................. GGCGCCACCACCTGGTGGGCCGACGGCACCAC 12027 29 100.0 32 ............................. GCCGTGATCCACGCGTCGTGCTGAACGCCGAC 11966 29 100.0 32 ............................. CGCGTCGTCGGCGCCTTCGGCGGCAAGGAGCT 11905 29 100.0 33 ............................. AACTCCAGTTGCTCGACCGGTCGGCGGTTGGCG 11843 29 100.0 32 ............................. TACACCTCCAACATCATGTCCGCGTTGGGCTT 11782 29 100.0 32 ............................. GTGGTCGGCGTAGTCGAGGCTGCTCCCCACGT 11721 29 100.0 32 ............................. TCGACGTCCCAGGTCGCCCGGCCGTAGATCTG 11660 29 100.0 32 ............................. CAGATGCGCCGCCAAGCCGAGATCGCGGGCCG 11599 29 100.0 32 ............................. TGGTCGAGCTGCTGCCGCTCGGCCGGGGTGAG 11538 29 96.6 33 .......................A..... CACGCCGATCCGGCGGTGAAGTGCATCAGATGG 11476 29 100.0 32 ............................. TTCGGCTGGCCGCACCACTGCTTCTGGTTGAA 11415 29 100.0 32 ............................. CAGGCACACAGTTGCTCGATGAGAGCCCTGAC 11354 29 100.0 32 ............................. GTCCGCCAAGTGCTCCGCTCGGCGGCCTCCGA 11293 29 100.0 32 ............................. GGTCCCCGGCTGCCCCGCCTCCAGTTCGCCCA 11232 29 96.6 32 ....................A........ ACCTTCGAGCCGCCGGAGACGTTACGGTCACG 11171 29 100.0 32 ............................. TGCTCGCCACGATCACCGTCGACGACGGCCCG 11110 29 100.0 32 ............................. TACTGCAAGTCCATGACCGGCGCGGCCGGTGA 11049 29 100.0 32 ............................. GCGCGGCGGCGCACCAAGCCGACCGACGCCGA 10988 29 100.0 32 ............................. GTCCAGCACACGGACGCCGAGGGCATCACGGT 10927 29 96.6 32 ............................T CACGGCTGTTTCATCGCGCCCGAGGTCGTCGA 10866 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.5 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGAAGGCCGGCGTCGCCTTGCCGATGTCGTGCGTTGTGGCCAGCCACACCGCCAACCGCCGCCCGTCCGCCTCTCCGGCCGGCAGCGCTTCGGCGGCCAGCCGGCGGACCTGCTCCGGCAGCCACCGGTCCCACAGCCTCCCGGCCACGGCTCCACTGTCGGCCATATGCCGCCACAGCGGCAGCCAGCCACCACTGGACCGGTCGTGCTTGGCCCACACCACCCGCGCCGGAGGTGACAATTCCGTACCGAAACGCGGCAGTTCATCCCTCTGCCCTGTCACGACGCGAGTACATCGCGTTCCTGTCCGGCCTGTCCAGCAAACACCGAAATCCGCCCTCTCGACGAGGGACTGACTACGATGCCCCCGATCCGCGATGCACGCGAAACGGTCCCCACCGCCCCGCAGACCGACCCGCCCAACCGGGAGCGAAATGTCCGAATCTCCAATAGTTGCTCAGCCCGGCCACCCGCCGCCCTAAACTCCCAGCTCACCAAGT # Right flank : GACCTGCGCCCCTCGTCCGTCTGCTCCCCGCGCGTGCGGGTCGTCCTCGCGCCCGACCCGCACGCCGCGATAGCACTCCAGGGAGTCGGCTGCACTCTTGCCTCTGTGTTTGCCATTCCTGAGGCGAGTCGGCGGTCACGGATTTGCGTGTACGCGGCGCTGGCGCGTGTCTCGTAGGTTTCTGCGGACAGTTCGTGGGCCACGATGAGCGTTCGAGGTTTGGGCGGTTTCCCGCTATGCCGACCGCGGGTCCGGGCAGCGTTCGCGGCCGCGCGGGCATGTCAGCAGCGTACGAACGACGATCCGGCCGGGTTCGTAGTAGCCGATGTAGGCGTCCTGGCCGAGTTGGAGCACGCGGTGTGCGTGTTCCAGGTGTTGCGCCACGGGGAGCCCGCCGGGCGCCGGTGTGTGTCCGCCCAGCTCCTTGGCGAGCCAGGCGTACGCCTCGTCGGCGTGGTGGTAGGTGCCGGCCAGCATGGTCTTCGGCTTCCGGAACCAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2142-1502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJXA010000173.1 Streptomyces alkaliterrae strain OF8 NODE_173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2141 29 96.6 33 ...........T................. TTGGTGCCGTAGGGCGCCGCGACGGGCTTCGCC 2079 29 100.0 32 ............................. CCATTCGGGACGTCCTGGCCGTCGGTGACGAC 2018 29 100.0 32 ............................. TGACAATGCGTATCTTCGGACGCGAGCCTGCG 1957 29 100.0 32 ............................. GATTCCGAGTGGGCGCGGTTCCCCACCTTCCA 1896 29 100.0 32 ............................. TGGCCACGCGTCGAAACCAACCCGAGCTTCCT 1835 29 100.0 32 ............................. GACGGCGGGGCGAGGGTGACGTTCACCGGTCT 1774 29 100.0 32 ............................. GGCAGCACCGCCCGCACCGAGGCCGGCAAACC 1713 29 96.6 32 ......T...................... TCGGGGTCGGGGCGACCCCACGGCCGGTACAG 1652 29 100.0 32 ............................. TTCATGGACGTTTCCATGAAGTCGAAGACGTT 1591 29 100.0 32 ............................. GTCACCCGACCGCGCCGGGCCCACATCCGGTA 1530 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.1 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TCCCTGATGGCCTACTCCGAGTCGGCCCAACGGGGCCATCTTGAGCGAGAACTCGCCTTCGTGCTGCCCATGTTGACGGCCTACCATCAACTACAGGCCGAAGCGCCCTCGCAGGCGGCCTCCGTGGCAATGATCAACCAGTTGCGAAAGGGCACCCCGTGACGACCGAATCCCCCCGCTGGTTCAAGTCCTCCTACAGCGACAACGGCGGCCAGTGCGTTGAGGTCGCGGCCAACCTCGCCGCCTCCCACGGCGTGGTCCCCGTCCGCGACTCCAAGCACCCGACCGGCCCAGCCCTGGCCCTCCCCACCCTCGCCTTCACCACCTTCGTCACAAGCATCAAAACCGGCACCCTCTCCACCCTCTGATCCCCACGGGGCACAGCCCTGCCGGACTTCGCAACACAGGAACCGCTTCGCCCTATTCATGACGACTTGCCGGGATCAATGAAAGTGAGTGAAAACCACCCTCCCCCGCCACAAACCCGCAGGTCATCTAGT # Right flank : TGGTCCCGTTTCTGGCGGCAGGGGACGCTTCTAGTGCGAGCAACAGCGACGGCGACGCGTGCGCCTTGGGTTCGGGGAACGTGGCTGCGGGGTGGCGATCTTGGCGGGAGACTGGCCGGTATGAGGACAGCGTTTCGCGTGGAGACCGTGCGCGCCGCCGAGCGCGCGTTGATGGACCGGCTTCCTGAGGGGGAGTTGATGCGGCGGGCGGCGGCCGGGCTGGCCGCCGCGGCGGCCGGACTGCTCGGCCGGGTCTACGGCAGCCGGGTGCTGCTGCTCGTCGGCAGCGGCGACAACGGGGGCGACACCCTGTACGCGGGTGCCCGGCTCGCGCGGCGCGGCGCCGGCGTCACCGCCCTGCTGCTCTCGCCTGACCGGGCGCACCCCGGCGGGCTCGCCGCGTTGCGCGCCGCCGGCGGCCGGGTGCTGCCGGCCACCGAGGCGGCCCCGGGCACCCTCGCCGCCGACCTCGTACTGGACGGCATCACCGGTATCGGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //