Array 1 59190-61019 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZQ01000208.1 Acetobacter tropicalis strain LMG 19825 LMG19825_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 59190 32 100.0 35 ................................ GTTGCCTGACTGTGCTTTAAGCGGCACGGGTTGGC 59257 32 100.0 35 ................................ GCCCGCGTTCATGCGCACAGCACCACCAATGGAGC 59324 32 100.0 34 ................................ TGCACCGGCATTGACCACGCCAAGGAAGTAGCTG 59390 32 100.0 33 ................................ TGATTTCTTTAGGGAACAGCATGAGGGCGCTTT 59455 32 100.0 33 ................................ TGTTCAAACTGTAACACCTCACGATCTGGCAGC 59520 32 100.0 34 ................................ TGCATTTCCTGAACTATTCGCACATCCTCGTCAC 59586 32 100.0 34 ................................ CGTCCGGGTAATTGGTCCGGTCGTCCCATCCAAC 59652 32 100.0 33 ................................ ACCTCTTCCACGCTCCTATATCGTGAGAGTAGC 59717 32 100.0 35 ................................ TTGTATCATCACAAGGCTTACTCAGGACGCACCGG 59784 32 100.0 34 ................................ CACTGACTGGAATGCATTATTTACGAAAGCTGTA 59850 32 100.0 34 ................................ TACAGTGAGAGCAAAAGTTATTTCCCTCACATCA 59916 32 100.0 33 ................................ TCTAGTGTGGTAAGCAGTATACTATGACAACAT 59981 32 100.0 36 ................................ GCACGTCATGATGTCGGTGCCGTTGGAAGCGTAGTG 60049 32 100.0 36 ................................ AAGATCAATGGGCTGCCCATCGGTACCACACTTAAC 60117 32 100.0 35 ................................ AATTATGTTGACCCGGCGCTGATTGACATTCTTGT 60184 32 100.0 39 ................................ TTCGCAAAGACAAAGCCTTTTTTCAGCAGAGGGGTTTCG 60255 32 100.0 35 ................................ CAGTTTGATAAAGCCGTCACCGTAGGGCTGTAGGC 60322 32 100.0 34 ................................ TGTCTGGTAGCCCTGTGCATCGTAAAGAAGGATG 60388 32 100.0 33 ................................ ATGGTGTCATAAACTGGGAACCGCTTGCCGGTC 60453 32 100.0 35 ................................ CGGCTCTGCAACATTCGACATCGCCAGCGTCATTG 60520 32 100.0 34 ................................ ATCGCAAGTGGGGTCTGAACCGGCCCCCCCAATC 60586 32 100.0 34 ................................ CTCCAATCGGGCACCCCTCTGCAATCTTAAACCG 60652 32 100.0 33 ................................ CCATAACCCACCAGCGGACGGGCTTATAGAAAT 60717 32 100.0 37 ................................ GTTTTGCACGAGCGAAATCAGGCGGCTGCTATGGTAA 60786 32 100.0 36 ................................ ATGCCGTAGGGTTTTTACAATGTTGCGGTATTCGCC 60854 32 100.0 37 ................................ CCGGTTCAAATCCGCCCGTGATGTTATCCAGACCAGC 60923 32 100.0 33 ................................ CGTGATCTTTCCGGACAGGTTCCGCGTCATGCG 60988 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 35 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : AGGTTGGCAGGGGGCACAAGGTGCAGAATATGTAACAGCATACCGCCACCCGGGCCGAGCACCAGCAGGACCGCATAACACAGCAGGCAGATACGCCAGTTGACGAGAGGCTCCCGCACAATGTCAGTTGATGGCGGAAAGGATGAGGCGGATGCAGTATATAATCCGGGTGGTGTCGTCATTATAGTATGCTACCACCATGAAATCATGCTGTGTGCGACAAAATAGTGTGGCCCAGGTAGGAACGACCATGGCCACCTTATAGCTGACCGCTCCCTATTCCCTGCACGTAGCTATACTGTCCACCTATTTGCGGCAGACCAGCGCGAACCCCAATCACCCCTTAAAACCCCGCCAGGTTCGCGCAACCCATAACCCTTTAAAACAAAAAGATTTTCTTCCAAACCGCCAGATGGAAGCGTAACAATTCCCCGCTTTCCACACAGGTTCGCGCACACCCGCACATTCCCCCAGTCCTTTTCTGCTGCTATGCTCCCACA # Right flank : TTTCCCTTCGTTTGCCGCGTCTGCCACAGCGGCAGTCGCTCCCCGGTAAGCTTCCGGAGTGAGACGCCTTGTTGATTTTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26121-24892 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZQ01000209.1 Acetobacter tropicalis strain LMG 19825 LMG19825_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 26120 32 100.0 33 ................................ TCGAGTGTGGTAAGTAGTATCTTATGACAACAT 26055 32 100.0 34 ................................ AGCAAACGTATCAGACACTGAGGCTGAGGCTGTT 25989 32 100.0 36 ................................ TCCTTCACTAGCCGCAGAAAGCTGGGGAATTGGCCT 25921 32 100.0 35 ................................ TTGTAGAGGCCAAGGACATCGTTATAGATTTCCAT 25854 32 100.0 34 ................................ AGGCGGTTAATCAGATCAAACCGGGCTGCACCCG 25788 32 100.0 36 ................................ AATCTGAAAATGGGTAGCCGCTTCCGCTCTTATGAC 25720 32 100.0 34 ................................ TTCAAACCACGCGATGTCAGCCCCTTCCAGAGAC 25654 32 100.0 34 ................................ TGGCCTTACTGGATCAAGGATACTCGCGCCGATC 25588 32 100.0 35 ................................ CACATGCAGCACAACAGCCTCCCCCTGGATGACAA 25521 32 100.0 35 ................................ AAAGGACACAGCGGAACCGGAACCTTTGATTGGGC 25454 32 100.0 34 ................................ TGCTCGGCGCTCAGCCTGATCCAGCATCTCGGAG 25388 32 100.0 35 ................................ GGGATATCCCCGTAGCCGCCGGTGTCCCGGCACTA 25321 32 100.0 34 ................................ TGGACGATGCCTGCTGTAGAGCCGCTTTTGCCTG 25255 32 100.0 34 ................................ ACGAAAATGATGTCACCCGAAGGGGTCATTATCC 25189 32 100.0 34 ................................ CTCCCAATCCAGAAAGGGATGGTCTGTATGCAAT 25123 32 100.0 35 ................................ TCTGGCCCTCCAACGATGGTTATGGCTACAGCAGG 25056 32 100.0 35 ................................ ATCTGCCAGCCAGCTCTCCACGTCCTCTGGAGATT 24989 32 100.0 33 ................................ TGTCCCGCAACAGCAATACGGCCAACGTCATAC 24924 32 87.5 0 .............T...G......G......T | C [24903] ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.3 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : GCCAGATTCTGGTGGCCACCCGTGGGCGCGAACAGACACGCCAAAGCCTGCGCGTGGCGGCGGATGTCTGGTGGGTGGAAAGCCACTGGGTTATTCTGGAAATGGTAAAACACAATATAGGCTGGGCATTTGTCTCAGACCATGTGCTGGCGGCCTCTCCCACAGCGCCGGATATTGTGGCCCCCAACCTCCAGTTCGATGCCGGAGAACGCCTGACCCCTCTTGTCACCGTGTGGCACAAGAAGCATCCTCATGGTCCTGCCGCCCAATGGCTCCGCAACCGCCTGCGCCAAGGCGGTATTCCCGGTGTTACGCATCCGTCGCGCGAACCCTGATCACCCATCAAAATCCCGGCAGGGTCGCGCACGCGTCAACTCATTATAAAATAAGAATTTTTTCAAACACGCTGATCCCAAAGCGTTCAGCAGCAGCACTCGCAGCCACCAGTTCGCGCAAAAAGCGCATTCCGCCCAGCCCCAGACAGGTGCTAAACCTACACC # Right flank : ATGGGGGGAGAGCACGAATTGGTCATGTTCTCTGGCGGGCCACATGCAGGCGCGTTGGCGTAAGCCGGGAGGAGAGAACTAAAGCTCTTGCGGGCTTCAGGGCATCTATGCGCAGAGTGGAGGTAAGGATTGCTTAATAAGCAATGGTGACAGGTCATTCTGAATGATTACATTTTATTAAGAATAAGTGATACCTGAGGGGAAGGGAGGTCAGTGGTTCTTTACGCGCACTCTCTCCCTGCTCCTGCAGACAAGGCGCGATGGGAACCTTTGCGAGAGCATCTTGAGTGTGTCGCGCAAAGAGGGGCGCTTTTTGCACAGCCATTCGGACTGGCCATGCTCGCGCGGGCTGCGGGGCTTTTGCATGATATTGGTAAAGCATCTGCGGCGTATCAGGCTTATATCAGTTCAGAAGTCAGCCAGAAGGGACCAGATCACAGCACGGCGGGGGCACGTGAGGCTGTAACGTTATATGGCCAGCAACTGGGGCGTTTACTCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19516-18491 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZQ01000173.1 Acetobacter tropicalis strain LMG 19825 LMG19825_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19515 32 93.8 36 TA.............................. GGGATGGACGAGGCCTACAAAGCATTTCAGCCCCCG 19447 32 100.0 33 ................................ TATGTCAGACGATGATGCGGCCTGTATCTGTGC 19382 32 100.0 34 ................................ GTGCTCTCTCTGATGCTGGCTTGGAACTCACGCA 19316 32 100.0 33 ................................ CAAAATGAAAGCCTGCCGTTGCCGGTCGTATCC 19251 32 100.0 34 ................................ GTCTGGATAGACCGTGCCGCATTGTTGCCCAGAG 19185 32 100.0 34 ................................ TATGATCTTGCCTGTAAGGCTGATTTGGTTGTTG 19119 32 100.0 35 ................................ ACAGAAATTGGCAAAGGCCATTGCGCCCATTGCCC 19052 32 100.0 35 ................................ CCAAAAATGTTTGCGATGATGGATAAAGGTGAGAT 18985 32 100.0 34 ................................ CAGTGGTTCGAGGGGGGCGCTGTCTCCGGCGCGT 18919 32 100.0 33 ................................ CGTCAACAGATAACGGGACGGTAGCTCTGGATA 18854 32 100.0 35 ................................ ATGATAAGGTGGGGGATGTAGGCTTGCCTGTGTTG 18787 32 100.0 34 ................................ CCCTATCGTGGCATGCTGGAATGGCAAGAACAGT 18721 32 100.0 34 ................................ CAGATAGATTGTTGCTGGCATCACCGACAATATC 18655 32 100.0 35 ................................ AAATACCCGGAGCCGGGGTGGGAAGAACGGGCACG 18588 32 100.0 34 ................................ TTTCTGCTGATTCCATTCCAGTCCGATATCGTAG 18522 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.4 34 GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Left flank : AGCCTGATTACGCCCGCGGCTCTCTCCGGATGC # Right flank : TGCCTGTTCATAAGCTGTTTCGCTCCGCGTTGTGCGGATCGGTAGCCGGGGGAGGGCGAGTCTTATAGTGCCGTTGTGGTGGCGGGTGCTTTCTCTCCCCTGTGGCCGTCTTCTGTATTCAGGAAAACACGATTGTGCGGCGGCCGTTTAGCATAACACGTTGTTCCACATGCAGTTTTACCGCGCGGGCCAGAACTTGCGATTCAACGCCCCGGCCTGTAGCAATGTAGTCCTCGGGGGAGAGGTTGTGGGTGACGCGGGCGGTTTCCTGCTCAATGATAGGCCCTTCATCCAGATCAGCCGTTACGTAATGGGCCGTGGCGCCAATCAGCTTTACCCCGCGCGCGTAAGCCTGATGGTAAGGGCGTGCGCCCTTGAAGGAAGGCAGGAAGGAGTGGTGGATGTTGATGATCTGTCCGCTCATTTCAGCGGAAAGCCGGTCAGAGAGCACCTGCATGTATCGGGCCAGAACAATCAGGGAGGCCCCTGTTTCCTTCACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //