Array 1 658803-659427 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009633.1 Francisella tularensis subsp. novicida U112 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 658803 36 100.0 31 .................................... GAGAAGTCATTTAATAAGGCCACTGTTAAAA 658870 36 100.0 30 .................................... GCTACTATTCCTGTGCCTTCAGATAATTCA 658936 36 100.0 27 .................................... GTCTAGAGCCTTTTGTATTAGTAGCCG 658999 36 100.0 26 .................................... TAGCGATTTATGAAGGTCATTTTTTT 659061 36 100.0 29 .................................... AGATTAAAAGGTAATTCTATCTTGTTGAG 659126 36 100.0 29 .................................... TACCTAGTAGATACGCTTACTGATAACAA 659191 36 100.0 29 .................................... AAACTTTCATTTATGATATAAAGTTTTTT 659256 36 100.0 32 .................................... TCAAAAGGCAAGAGAGACGGAAATAAATGGAC 659324 36 100.0 29 .................................... TTGTTTGATTGCTTGCATTGAACCTTGAA 659389 35 91.7 0 ......................G.-.....T..... | A,A,TT [659418,659420,659424] ========== ====== ====== ====== ==================================== ================================ ================== 10 36 99.2 29 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGGCAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTTTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATAACTATGTACCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAAGATGTGATAAAATATGGTTATGCGATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACTACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TTTCTAAATTAGAATTTTCTAATATATCACTACTTGAGAATTTATAGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATCTATTGCGGTGATAAAAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGATCTACAAAAAAAAGAGAAGGTTAAGCTAATAGATATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1311669-1312921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009633.1 Francisella tularensis subsp. novicida U112 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 1311669 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [1311676] 1311740 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [1311765] 1311948 37 100.0 34 ..................................... ACAATGGCAAGCTTGATTACTTTTATAGTGTGAT 1312019 37 100.0 36 ..................................... AAGGATTTAATACCTTAAAATTATCCAAATTTATAT 1312092 37 100.0 36 ..................................... TGCCTAATCCTCAGCAGCAACACTTAATTCAAGAAT 1312165 37 100.0 34 ..................................... TTACACATTCAGCTGGTTCTTTAGCATTATTAAC 1312236 37 100.0 36 ..................................... AGTAATAGCCAATGCTTTTAAACTACTGATATATAC 1312309 37 100.0 36 ..................................... GCAATGACAGAAAACAGCACAGATAATAAAAAACTA 1312382 37 100.0 37 ..................................... CTATAGGGTTACCTATCTTTTGAGTGTTGGCAAATAA 1312456 37 100.0 34 ..................................... GTAATGGGCAGGTTTTGTATGGTCATATAGGAGT 1312527 37 100.0 34 ..................................... ACTATTTAAGATAACTCGACCAATATTTGACAAA 1312598 37 100.0 36 ..................................... ATCTGGTGAAGATGTAATCGAAATTGATCCGCTTAA 1312671 37 100.0 34 ..................................... CAGTCTTCGCAATGACACAACCACAAGCCGCATA 1312742 37 100.0 35 ..................................... AAGAGATATCTTAACTTTTGGTTTTTGGTTTTACC 1312814 37 100.0 34 ..................................... GCGAGTGATTAGCAGTTGATATATACCAATCTTG 1312885 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 16 37 97.3 44 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAACTAATAAAAATAACTTTAAAAAAGATATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAAATGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : GAGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATAAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGCAATTAATATATCTTGTTCGCTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCACCTTCAGTGGCAATTAGAGGTTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGAATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //